ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__19 (TPF updated: 2014-09-18)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CTD-3093M3
Hschr19LRC_COX2_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
2
Hschr19LRC_COX2_ctg3_1
CONTAINED
KF511280
KF511280.1
finished
1 CTD-3093M3
Hschr19LRC_COX2_ctg3_1
CONTAINER
bK3093M3
AC012314.8
finished
  GAP (type-2) length 61000 bps    
4 CH502-403H19
Hschr19LRC_COX2_ctg3_1
bCX403H19
EPN details
CU467018.4
finished
  GAP (type-2) length 5000 bps    
6 CH502-195L8
Hschr19LRC_COX2_ctg3_1
bCX195L8
EPN details
CU459006.1
finished
7 CTC-550B14
Hschr19LRC_COX2_ctg3_1
bK550B14
AC011476.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 137190 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 1 137190 +
137191 137602 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 KF511280.1 1 412 +
137603 198018 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC012314.8 137602 198017 +
198019 259018 4 N 61000 contig yes # ALIGN GENUS
259019 396481 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CU467018.4 1 137463 +
396482 401481 6 N 5000 contig yes # ALIGN GENUS
401482 581121 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 CU459006.1 1 179640 +
581122 731906 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AC011476.8 36280 187064 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CTD-3093M3
Hschr19LRC_COX2_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2 3' / 5'
137190 / 1
60416 / -
412
0.24
Identified
2014-09-18
fetch_ncbi...
humpub
 
2
Hschr19LRC_COX2_ctg3_1
CONTAINED
KF511280
-
-
KF511280.1
finished
412 - 3' / 5'
412 / 137602
- / 137190
412
0.24
Identified
2014-09-18
fetch_ncbi...
humpub
 
1 CTD-3093M3
Hschr19LRC_COX2_ctg3_1
CONTAINER
bK3093M3
-
-
AC012314.8
finished
198017 CIT-HSP-D2        
  GAP (type-2) length 61000 bps                  
4 CH502-403H19
Hschr19LRC_COX2_ctg3_1
bCX403H19
EPN details
Submitted to EMBL
12-JAN-09
CU467018.4
finished
137463 CHORI-502        
  GAP (type-2) length 5000 bps                  
6 CH502-195L8
Hschr19LRC_COX2_ctg3_1
bCX195L8
EPN details
Submitted to EMBL
12-JAN-09
CU459006.1
finished
179640 CHORI-502 3' / 5'
179640 / 36280
- / -
36252
0.47
Identified
2014-09-18
fetch_ncbi...
humpub
 
7 CTC-550B14
Hschr19LRC_COX2_ctg3_1
bK550B14
-
-
AC011476.8
finished
187064 CIT-HSP-C        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
36,663
Total finished length of fin clones w/ overlap
702,596
Total finished length of fin clones w/o overlap
665,933
Total overlap length of fin+unfin clones
36,663
Total finished length of fin+unfin clones w/ overlap
702,596
Total finished length of fin+unfin clones w/o overlap
665,933

Dovetails

# rank accession status length date
1 1 AC012314.8 unfinished 60,416 Wed, 17 Sep 2014 23:33

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