ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__6 (TPF updated: 2015-07-02)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP5-1186N24
Hschr6_MHC_COX_ctg1
dJ1186N24
AL049543.17
finished
2 CH502-254L4
Hschr6_MHC_COX_ctg1
bCX254L4
AL671879.2
finished
3 CH502-419D21
Hschr6_MHC_COX_ctg1
bCX419D21
AL901607.1
finished
4 CH502-57P4
Hschr6_MHC_COX_ctg1
bCX57P4
AL669978.3
finished
5 CH502-196D17
Hschr6_MHC_COX_ctg1
bCX196D17
AL662859.5
finished
6 CH502-216M5
Hschr6_MHC_COX_ctg1
bCX216M5
AL662865.4
finished
7 CH502-228J24
Hschr6_MHC_COX_ctg1
bCX228J24
AL662852.9
finished
8 CH502-150E11
Hschr6_MHC_COX_ctg1
bCX150E11
AL671755.4
finished
9 CH502-147D4
Hschr6_MHC_COX_ctg1
bCX147D4
AL662857.3
finished
10 CH502-92J3
Hschr6_MHC_COX_ctg1
bCX92J3
AL732432.3
finished
11 CH502-128A13
Hschr6_MHC_COX_ctg1
bCX128A13
AL662869.2
finished
12 CH502-101I20
Hschr6_MHC_COX_ctg1
bCX101I20
AL662826.11
finished
13 CH502-231I11
Hschr6_MHC_COX_ctg1
bCX231I11
AL669813.6
finished
14 CH502-209H21
Hschr6_MHC_COX_ctg1
bCX209H21
AL671561.7
finished
15 CH502-67J3
Hschr6_MHC_COX_ctg1
bCX67J3
AL645935.7
finished
16 CH502-218N7
Hschr6_MHC_COX_ctg1
bCX218N7
AL671859.3
finished
17 CH502-300M20
Hschr6_MHC_COX_ctg1
bCX300M20
AL845450.3
finished
18 CH502-141O14
Hschr6_MHC_COX_ctg1
bCX141O14
AL662832.5
finished
19 CH502-22J1
Hschr6_MHC_COX_ctg1
bCX22J1
AL662831.3
finished
20 CH502-17K10
Hschr6_MHC_COX_ctg1
bCX17K10
AL662822.4
finished
21 CH502-98J21
Hschr6_MHC_COX_ctg1
bCX98J21
AL662825.5
finished
22 CH502-48F10
Hschr6_MHC_COX_ctg1
bCX48F10
AL732442.7
finished
23 CH502-111D4
Hschr6_MHC_COX_ctg1
bCX111D4
AL662848.6
finished
24 CH502-105N19
Hschr6_MHC_COX_ctg1
bCX105N19
AL662854.7
finished
25 CH502-31G15
Hschr6_MHC_COX_ctg1
bCX31G15
AL663093.10
finished
26 CH502-34D1
Hschr6_MHC_COX_ctg1
bCX34D1
AL662867.5
finished
27 CH502-101P6
Hschr6_MHC_COX_ctg1
bCX101P6
AL662833.4
finished
28 CH502-426A24
Hschr6_MHC_COX_ctg1
bCX426A24
AL845556.2
finished
29 CH502-25O20
Hschr6_MHC_COX_ctg1
bCX25O20
AL669854.8
finished
30 CH502-205D4
Hschr6_MHC_COX_ctg1
bCX205D4
AL662866.7
finished
31 CH502-270M2
Hschr6_MHC_COX_ctg1
bCX270M2
AL662847.6
finished
32 CH502-88C14
Hschr6_MHC_COX_ctg1
bCX88C14
AL670886.6
finished
33 CH502-40G17
Hschr6_MHC_COX_ctg1
bCX40G17
AL662834.8
finished
34 CH502-116I9
Hschr6_MHC_COX_ctg1
bCX116I9
AL662849.8
finished
35 CH502-105D18
Hschr6_MHC_COX_ctg1
bCX105D18
AL662828.5
finished
36 CH502-173E2
Hschr6_MHC_COX_ctg1
bCX173E2
AL662830.14
finished
37 CH502-556A18
Hschr6_MHC_COX_ctg1
bCX556A18
AL845557.1
finished
38 CH502-213L12
Hschr6_MHC_COX_ctg1
bCX213L12
AL670296.7
finished
39 CH502-181I15
Hschr6_MHC_COX_ctg1
bCX181I15
AL662842.3
finished
40 CH502-300D23
Hschr6_MHC_COX_ctg1
bCX300D23
AL928759.1
finished
41 CH502-254C11
Hschr6_MHC_COX_ctg1
bCX254C11
AL731683.12
finished
42 CH502-231H22
Hschr6_MHC_COX_ctg1
bCX231H22
AL713890.7
finished
43 CH502-32M13
Hschr6_MHC_COX_ctg1
bCX32M13
AL671681.4
finished
44 CH502-136A3
Hschr6_MHC_COX_ctg1
bCX136A3
AL662845.5
finished
45 CH502-22I16
Hschr6_MHC_COX_ctg1
bCX22I16
AL662824.9
finished
46 CH502-269C15
Hschr6_MHC_COX_ctg1
bCX269C15
AL713971.7
finished
47 CH502-165D10
Hschr6_MHC_COX_ctg1
bCX165D10
AL662827.3
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 63487 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL049543.17 32108 95594 -
63488 240482 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL671879.2 1 176995 +
240483 297234 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL901607.1 2001 58752 +
297235 358739 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL669978.3 2001 63505 +
358740 417972 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662859.5 2001 61233 +
417973 549729 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662865.4 2001 133757 +
549730 690291 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662852.9 2001 142562 +
690292 697279 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL671755.4 2001 8988 +
697280 831966 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662857.3 2001 136687 +
831967 882630 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL732432.3 2001 52664 +
882631 1014466 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662869.2 2001 133836 +
1014467 1157897 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662826.11 2001 145431 +
1157898 1271030 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL669813.6 2001 115133 +
1271031 1374663 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL671561.7 2001 105633 +
1374664 1502274 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL645935.7 2001 129611 +
1502275 1644443 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL671859.3 2001 144169 +
1644444 1671347 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL845450.3 2001 28904 +
1671348 1830695 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662832.5 2001 161348 +
1830696 1863525 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662831.3 2001 34830 +
1863526 2024473 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662822.4 2001 162948 +
2024474 2104241 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662825.5 2001 81768 +
2104242 2173659 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL732442.7 2001 71418 +
2173660 2357276 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662848.6 2001 185617 +
2357277 2439750 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662854.7 2001 84474 +
2439751 2555077 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL663093.10 2001 117327 +
2555078 2623365 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662867.5 2001 70288 +
2623366 2790252 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662833.4 2001 168887 +
2790253 2831255 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL845556.2 2001 43003 +
2831256 2897635 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL669854.8 2001 68380 +
2897636 2992950 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662866.7 2001 97315 +
2992951 3126734 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662847.6 2001 135784 +
3126735 3215466 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL670886.6 2001 90732 +
3215467 3393360 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662834.8 2001 179894 +
3393361 3479819 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662849.8 2001 88459 +
3479820 3616811 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662828.5 2001 138992 +
3616812 3718138 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662830.14 2001 103327 +
3718139 3765416 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL845557.1 2001 49278 +
3765417 3924039 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL670296.7 2001 160623 +
3924040 4052858 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662842.3 2001 130819 +
4052859 4056766 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL928759.1 2001 5908 +
4056767 4138644 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL731683.12 2001 83878 +
4138645 4172055 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL713890.7 2001 35411 +
4172056 4336858 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL671681.4 2001 166803 +
4336859 4431986 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662845.5 2001 97128 +
4431987 4617950 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662824.9 2001 187964 +
4617951 4686571 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL713971.7 2001 70621 +
4686572 4795365 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 47 AL662827.3 2001 110794 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
0
Total clones
47
Clone HTGS Phases
finished
47
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
122,090
Total finished length of fin clones w/ overlap
4,917,472
Total finished length of fin clones w/o overlap
4,795,382
Total overlap length of fin+unfin clones
122,090
Total finished length of fin+unfin clones w/ overlap
4,917,472
Total finished length of fin+unfin clones w/o overlap
4,795,382

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Other links

* quick link - http://q.sanger.ac.uk/iyndrw2c