ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_2__12 (TPF updated: 2014-08-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-144O23
HSCHR12_3_CTG2
bA144O23
AC006518.17
finished
2 RP11-673D15
HSCHR12_3_CTG2
bA673D15
AC018630.40
finished
3 CH17-26M1
HSCHR12_3_CTG2
bMO26M1
AC245078.1
finished
4 CH17-457D18
HSCHR12_3_CTG2
bMO457D18
AC244131.2
finished
5 RP11-711K1
HSCHR12_3_CTG2
bA711K1
AC010176.12
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 173735 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC006518.17 1 173735 +
173736 174886 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC018630.40 164713 165863 -
174887 375585 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC245078.1 1 200699 +
375586 462576 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC244131.2 69558 156548 -
462577 572554 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC010176.12 1 109978 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-144O23
HSCHR12_3_CTG2
bA144O23
-
-
AC006518.17
finished
173735 RPCI-11.1 3' / 3'
173735 / 165863
- / -
2005
0
Identified
2014-08-23
fetch_ncbi...
humpub
 
2 RP11-673D15
HSCHR12_3_CTG2
bA673D15
-
-
AC018630.40
finished
167868 RPCI-11.3 5' / 5'
164713 / 1
- / -
153526
13.46
Identified
2014-08-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
3 CH17-26M1
HSCHR12_3_CTG2
bMO26M1
-
-
AC245078.1
finished
200699 CHORI-17 3' / 3'
200699 / 156548
- / -
45798
0
Identified
2014-08-23
fetch_ncbi...
humpub
 
4 CH17-457D18
HSCHR12_3_CTG2
bMO457D18
-
-
AC244131.2
finished
202346 CHORI-17 5' / 3'
69558 / 109978
- / -
161221
0.65
Identified
2014-08-23
fetch_ncbi...
humpub
Certificate approved
5 RP11-711K1
HSCHR12_3_CTG2
bA711K1
-
-
AC010176.12
finished
202103 RPCI-11.3        

Statistics

Clone Summary

Number of gaps
0
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
362,550
Total finished length of fin clones w/ overlap
946,751
Total finished length of fin clones w/o overlap
584,201
Total overlap length of fin+unfin clones
362,550
Total finished length of fin+unfin clones w/ overlap
946,751
Total finished length of fin+unfin clones w/o overlap
584,201

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Other links

* quick link - http://q.sanger.ac.uk/xvljq4ww