ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__19 (TPF updated: 2015-04-28)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CTD-2626G11
HSCHR19_1_CTG2
bK2626G11
AC010329.3
finished
2 CTC-352P4
HSCHR19_1_CTG2
bK352P4
AC008463.7
finished
3 CTD-2542C24
HSCHR19_1_CTG2
bK2542C24
AC008739.5
finished
  GAP (type-3) length unknown    
5 RP11-420K14
HSCHR19_2_CTG2
CONTAINER
bA420K14
AC092364.3
finished
6 ABC9-43816200N12
HSCHR19_2_CTG2
CONTAINED
f9A43816200N12
AC226770.1
finished
5 RP11-420K14
HSCHR19_2_CTG2
CONTAINER
bA420K14
AC092364.3
finished
  GAP (type-3) length unknown    
8 RP11-157B13
HSCHR19_3_CTG2
CONTAINER
bA157B13
AC073539.3
finished
9 ABC9-43919000A3
HSCHR19_3_CTG2
CONTAINED
f9A43919000A3
AC212997.3
finished
8 RP11-157B13
HSCHR19_3_CTG2
CONTAINER
bA157B13
AC073539.3
finished
  GAP (type-3) length unknown    
11 CTD-2518G19
HSCHR19_1_CTG3_1
CONTAINER
bK2518G19
AC010614.8
finished
12 ABC9-45924000L20
HSCHR19_1_CTG3_1
CONTAINED
f9A45924000L20
AC210437.3
finished
11 CTD-2518G19
HSCHR19_1_CTG3_1
CONTAINER
bK2518G19
AC010614.8
finished
  GAP (type-3) length unknown    
14 CTD-3093M3
Hschr19LRC_COX1_ctg3_1
bK3093M3
AC012314.8
finished
15 CH502-105G6
Hschr19LRC_COX1_ctg3_1
bCX105G6
CU457734.2
finished
  GAP (type-2) length 5000 bps    
17 CH502-535A19
Hschr19LRC_COX1_ctg3_1
bCX535A19
CU467002.2
finished
18 CH502-85G21
Hschr19LRC_COX1_ctg3_1
bCX85G21
CU234142.1
finished
19 CH502-360G3
Hschr19LRC_COX1_ctg3_1
bCX360G3
CU459007.1
finished
  GAP (type-2) length 100000 bps    
21 CTC-550B14
Hschr19LRC_COX1_ctg3_1
bK550B14
AC011476.8
finished
  GAP (type-3) length unknown    
23 LLNLR-273F8
HSCHR19_4_CTG2
llnlrE273F8
AC005390.1
finished
24 ABC9-43915000L14
HSCHR19_4_CTG2
f9A43915000L14
AC217140.4
finished
  GAP (type-3) length unknown    
26 LLNLF-116B1
HSCHR19_2_CTG3_1
llnlfE116B1
AC010504.7
finished
27 ABC7-42756300M20
HSCHR19_2_CTG3_1
f7A42756300M20
AC231987.2
finished
  GAP (type-3) length unknown    
29 CH17-20A21
HSCHR19_3_CTG3_1
CONTAINER
bMO20A21
AC243960.3
finished
30 ABC8-40961800K13
HSCHR19_3_CTG3_1
CONTAINED
f8A40961800K13
AC236970.3
finished
29 CH17-20A21
HSCHR19_3_CTG3_1
CONTAINER
bMO20A21
AC243960.3
finished
  GAP (type-3) length unknown    
32 LLNLR-298A4
HSCHR19_5_CTG2
CONTAINER
llnlrE298A4
AC004799.2
finished
33
HSCHR19_5_CTG2
CONTAINED
KF456467
KF456467.1
finished
32 LLNLR-298A4
HSCHR19_5_CTG2
CONTAINER
llnlrE298A4
AC004799.2
finished
34 ABC10-44635500N14
HSCHR19_5_CTG2
f10A44635500N14
AC212840.2
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 145329 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC010329.3 1 145329 +
145330 221450 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC008463.7 1 76121 +
221451 398120 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC008739.5 1 176670 -
398121 448120 4 N 50000 contig no
448121 464510 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC092364.3 1 16390 +
464511 506350 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC226770.1 1 41840 +
506351 628069 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC092364.3 48752 170470 +
628070 678069 8 N 50000 contig no
678070 746486 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC073539.3 1 68417 +
746487 785863 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC212997.3 1 39377 -
785864 870489 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC073539.3 99588 184213 +
870490 920489 12 N 50000 contig no
920490 995153 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AC010614.8 1 74664 +
995154 1037234 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AC210437.3 1 42081 -
1037235 1086257 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AC010614.8 109573 158595 +
1086258 1136257 16 N 50000 contig no
1136258 1266435 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 18 AC012314.8 1 130178 +
1266436 1448436 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 18 CU457734.2 1 182001 +
1448437 1453436 19 N 5000 contig yes # ALIGN GENUS
1453437 1575187 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 CU467002.2 1 121751 +
1575188 1692811 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 CU234142.1 2001 119624 +
1692812 1839295 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 CU459007.1 2001 148484 +
1839296 1939295 23 N 100000 contig yes # ALIGN GENUS
1939296 2126359 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 AC011476.8 1 187064 +
2126360 2176359 25 N 50000 contig no
2176360 2193908 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 AC005390.1 1 17549 +
2193909 2230965 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 AC217140.4 1 37057 +
2230966 2280965 28 N 50000 contig no
2280966 2294277 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 30 AC010504.7 28954 42265 -
2294278 2328470 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 30 AC231987.2 1 34193 -
2328471 2378470 31 N 50000 contig no
2378471 2516722 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 AC243960.3 1 138252 +
2516723 2542981 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 AC236970.3 1 26259 +
2542982 2612232 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 AC243960.3 156170 225420 +
2612233 2662232 35 N 50000 contig no
2662233 2687638 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 AC004799.2 1 25406 +
2687639 2687969 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 KF456467.1 1 331 +
2687970 2690855 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 AC004799.2 25738 28623 +
2690856 2725895 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 39 AC212840.2 1 35040 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
10
Gap types
type-2
2
type-3
8
Total clones
24
Clone HTGS Phases
finished
24
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
339,127
Total finished length of fin clones w/ overlap
2,569,041
Total finished length of fin clones w/o overlap
2,229,914
Total overlap length of fin+unfin clones
339,127
Total finished length of fin+unfin clones w/ overlap
2,569,041
Total finished length of fin+unfin clones w/o overlap
2,229,914

Dovetails

# rank accession status length date
1 3 AC008739.5 unfinished 1 Mon, 27 Apr 2015 23:28
2 5 AC092364.3 unfinished 121,719 Mon, 27 Apr 2015 23:28
3 8 AC073539.3 unfinished 84,626 Mon, 27 Apr 2015 23:28
4 11 AC010614.8 unfinished 49,023 Mon, 27 Apr 2015 23:28
5 29 AC243960.3 unfinished 69,251 Mon, 27 Apr 2015 23:28
6 32 AC004799.2 unfinished 10,492 Mon, 27 Apr 2015 23:28

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Other links

* quick link - http://q.sanger.ac.uk/q7vu89xj