ChromoView - clone / Assembly sequencing status
Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__18 (TPF updated: 2018-01-16) TPF
#
Clone ext/Contig
Clone int
Acc/Fin
1
RP11-1030E3
Hschr18_1_ctg1_1
bA1030E3
AC105227.6
finished
2
RP11-2E13
Hschr18_1_ctg1_1
bA2E13
AC013759.6
finished
3
RP11-429H5
Hschr18_1_ctg1_1
bA429H5
AC090638.11
finished
GAP (type-3) length unknown
5
RP11-440L16
Hschr18_2_ctg1_1
CONTAINER
bA440L16
AC027216.6
finished
6
ABC9-43917900H23
Hschr18_2_ctg1_1
CONTAINED
f9A43917900H23
AC208322.3
finished
5
RP11-440L16
Hschr18_2_ctg1_1
CONTAINER
bA440L16
AC027216.6
finished
GAP (type-3) length unknown
8
RP11-117L4
Hschr18_1_ctg2
CONTAINER
bA117L4
AC103951.7
finished
9
ABC13-47619300L5
Hschr18_1_ctg2
CONTAINED
f13A47619300L5
AC216971.3
finished
8
RP11-117L4
Hschr18_1_ctg2
CONTAINER
bA117L4
AC103951.7
finished
GAP (type-3) length unknown
11
CTD-2541J13
Hschr18_2_ctg2
CONTAINER
bK2541J13
AC110597.7
finished
12
ABC7-42509700P1
Hschr18_2_ctg2
CONTAINED
f7A42509700P1
AC231988.2
finished
11
CTD-2541J13
Hschr18_2_ctg2
CONTAINER
bK2541J13
AC110597.7
finished
13
Hschr18_2_ctg2
CONTAINED
ABBA01056267
ABBA01056267.1
finished
11
CTD-2541J13
Hschr18_2_ctg2
CONTAINER
bK2541J13
AC110597.7
finished
14
ABC8-718040A12
Hschr18_2_ctg2
CONTAINED
f8A718040A12
AC231982.2
finished
11
CTD-2541J13
Hschr18_2_ctg2
CONTAINER
bK2541J13
AC110597.7
finished
GAP (type-3) length unknown
16
RP11-123I22
Hschr18_1_ctg2_1
CONTAINER
bA123I22
AC012572.17
finished
17
ABC10-45522900G22
Hschr18_1_ctg2_1
CONTAINED
f10A45522900G22
AC213028.5
finished
16
RP11-123I22
Hschr18_1_ctg2_1
CONTAINER
bA123I22
AC012572.17
finished
GAP (type-3) length unknown
19
RP11-849I19
Hschr18_2_ctg2_1
CONTAINER
bA849I19
AC099689.4
finished
20
ABC9-46272800J3
Hschr18_2_ctg2_1
CONTAINED
f9A46272800J3
AC214178.3
finished
19
RP11-849I19
Hschr18_2_ctg2_1
CONTAINER
bA849I19
AC099689.4
finished
GAP (type-3) length unknown
22
RP11-567M16
Hschr18_3_ctg2_1
CONTAINER
bA567M16
AC068473.19
finished
23
ABC13-49696800L24
Hschr18_3_ctg2_1
CONTAINED
f13A49696800L24
AC215996.3
finished
22
RP11-567M16
Hschr18_3_ctg2_1
CONTAINER
bA567M16
AC068473.19
finished
24
Hschr18_3_ctg2_1
CONTAINED
KF456464
KF456464.1
finished
22
RP11-567M16
Hschr18_3_ctg2_1
CONTAINER
bA567M16
AC068473.19
finished
GAP (type-3) length unknown
26
RP11-115N12
Hschr18_4_ctg1_1
CONTAINER
bA115N12
AC018517.7
finished
27
Hschr18_4_ctg1_1
CONTAINED
KF456390
KF456390.1
finished
26
RP11-115N12
Hschr18_4_ctg1_1
CONTAINER
bA115N12
AC018517.7
finished
28
ABC9-45237700A3
Hschr18_4_ctg1_1
CONTAINED
f9A45237700A3
AC226767.2
finished
26
RP11-115N12
Hschr18_4_ctg1_1
CONTAINER
bA115N12
AC018517.7
finished
29
Hschr18_4_ctg1_1
CONTAINED
KF456389
KF456389.1
finished
26
RP11-115N12
Hschr18_4_ctg1_1
CONTAINER
bA115N12
AC018517.7
finished
GAP (type-3) length unknown
31
RP11-863N1
Hschr18_5_ctg1_1
CONTAINER
bA863N1
AC099849.4
finished
32
ABC12-47954900M11
Hschr18_5_ctg1_1
CONTAINED
f12A47954900M11
AC221035.4
finished
31
RP11-863N1
Hschr18_5_ctg1_1
CONTAINER
bA863N1
AC099849.4
finished
GAP (type-3) length unknown
34
CTD-2015H3
HSCHR18_1_CTG1
bK2015H3
AP005057.2
finished
35
ABC10-43645600F20
HSCHR18_1_CTG1
f10A43645600F20
AC208950.3
finished
36
RP11-161I6
HSCHR18_1_CTG1
bA161I6
AP005481.2
finished
AGP
Details
Component Sanger::HumPub::ChromoView failed to execute
Statistics
Clone Summary
- Number of gaps
- 9
- Gap types
- type-3
- 9
- Total clones
- 27
- Clone HTGS Phases
- finished
- 27
- Number of clones w/o accession
- 0
Overlap Summary
- Total overlap length of fin clones
- 426,150
- Total finished length of fin clones w/ overlap
- 3,008,024
- Total finished length of fin clones w/o overlap
- 2,581,874
- Total overlap length of fin+unfin clones
- 426,150
- Total finished length of fin+unfin clones w/ overlap
- 3,008,024
- Total finished length of fin+unfin clones w/o overlap
- 2,581,874
AGP errors
#
rank
accession
seq_start
seq_end
strand
error
date
1
15
AC110597.7
61,046
180,310
1
Cannot find overlap between container clone AC110597 and contained clone ABBA01056267 and contained clone AC231982
Mon, 15 Jan 2018 23:26
Dovetails
#
rank
accession
status
length
date
1
5
AC027216
unfinished
27,041
Mon, 15 Jan 2018 23:26
2
8
AC103951
unfinished
91,758
Mon, 15 Jan 2018 23:26
3
11
AC110597
unfinished
98,566
Mon, 15 Jan 2018 23:26
4
16
AC012572
unfinished
122,966
Mon, 15 Jan 2018 23:26
5
19
AC099689
unfinished
69,682
Mon, 15 Jan 2018 23:26
6
22
AC068473
unfinished
94,568
Mon, 15 Jan 2018 23:26
7
26
AC018517
unfinished
180,449
Mon, 15 Jan 2018 23:26
8
31
AC099849
unfinished
36,179
Mon, 15 Jan 2018 23:26
TPF
# | Clone ext/Contig | Clone int | Acc/Fin |
---|---|---|---|
1 | RP11-1030E3 Hschr18_1_ctg1_1 |
bA1030E3 |
AC105227.6 finished |
2 | RP11-2E13 Hschr18_1_ctg1_1 |
bA2E13 |
AC013759.6 finished |
3 | RP11-429H5 Hschr18_1_ctg1_1 |
bA429H5 |
AC090638.11 finished |
GAP (type-3) length unknown | |||
5 | RP11-440L16 Hschr18_2_ctg1_1 CONTAINER |
bA440L16 |
AC027216.6 finished |
6 | ABC9-43917900H23 Hschr18_2_ctg1_1 CONTAINED |
f9A43917900H23 |
AC208322.3 finished |
5 | RP11-440L16 Hschr18_2_ctg1_1 CONTAINER |
bA440L16 |
AC027216.6 finished |
GAP (type-3) length unknown | |||
8 | RP11-117L4 Hschr18_1_ctg2 CONTAINER |
bA117L4 |
AC103951.7 finished |
9 | ABC13-47619300L5 Hschr18_1_ctg2 CONTAINED |
f13A47619300L5 |
AC216971.3 finished |
8 | RP11-117L4 Hschr18_1_ctg2 CONTAINER |
bA117L4 |
AC103951.7 finished |
GAP (type-3) length unknown | |||
11 | CTD-2541J13 Hschr18_2_ctg2 CONTAINER |
bK2541J13 |
AC110597.7 finished |
12 | ABC7-42509700P1 Hschr18_2_ctg2 CONTAINED |
f7A42509700P1 |
AC231988.2 finished |
11 | CTD-2541J13 Hschr18_2_ctg2 CONTAINER |
bK2541J13 |
AC110597.7 finished |
13 | Hschr18_2_ctg2 CONTAINED |
ABBA01056267 |
ABBA01056267.1 finished |
11 | CTD-2541J13 Hschr18_2_ctg2 CONTAINER |
bK2541J13 |
AC110597.7 finished |
14 | ABC8-718040A12 Hschr18_2_ctg2 CONTAINED |
f8A718040A12 |
AC231982.2 finished |
11 | CTD-2541J13 Hschr18_2_ctg2 CONTAINER |
bK2541J13 |
AC110597.7 finished |
GAP (type-3) length unknown | |||
16 | RP11-123I22 Hschr18_1_ctg2_1 CONTAINER |
bA123I22 |
AC012572.17 finished |
17 | ABC10-45522900G22 Hschr18_1_ctg2_1 CONTAINED |
f10A45522900G22 |
AC213028.5 finished |
16 | RP11-123I22 Hschr18_1_ctg2_1 CONTAINER |
bA123I22 |
AC012572.17 finished |
GAP (type-3) length unknown | |||
19 | RP11-849I19 Hschr18_2_ctg2_1 CONTAINER |
bA849I19 |
AC099689.4 finished |
20 | ABC9-46272800J3 Hschr18_2_ctg2_1 CONTAINED |
f9A46272800J3 |
AC214178.3 finished |
19 | RP11-849I19 Hschr18_2_ctg2_1 CONTAINER |
bA849I19 |
AC099689.4 finished |
GAP (type-3) length unknown | |||
22 | RP11-567M16 Hschr18_3_ctg2_1 CONTAINER |
bA567M16 |
AC068473.19 finished |
23 | ABC13-49696800L24 Hschr18_3_ctg2_1 CONTAINED |
f13A49696800L24 |
AC215996.3 finished |
22 | RP11-567M16 Hschr18_3_ctg2_1 CONTAINER |
bA567M16 |
AC068473.19 finished |
24 | Hschr18_3_ctg2_1 CONTAINED |
KF456464 |
KF456464.1 finished |
22 | RP11-567M16 Hschr18_3_ctg2_1 CONTAINER |
bA567M16 |
AC068473.19 finished |
GAP (type-3) length unknown | |||
26 | RP11-115N12 Hschr18_4_ctg1_1 CONTAINER |
bA115N12 |
AC018517.7 finished |
27 | Hschr18_4_ctg1_1 CONTAINED |
KF456390 |
KF456390.1 finished |
26 | RP11-115N12 Hschr18_4_ctg1_1 CONTAINER |
bA115N12 |
AC018517.7 finished |
28 | ABC9-45237700A3 Hschr18_4_ctg1_1 CONTAINED |
f9A45237700A3 |
AC226767.2 finished |
26 | RP11-115N12 Hschr18_4_ctg1_1 CONTAINER |
bA115N12 |
AC018517.7 finished |
29 | Hschr18_4_ctg1_1 CONTAINED |
KF456389 |
KF456389.1 finished |
26 | RP11-115N12 Hschr18_4_ctg1_1 CONTAINER |
bA115N12 |
AC018517.7 finished |
GAP (type-3) length unknown | |||
31 | RP11-863N1 Hschr18_5_ctg1_1 CONTAINER |
bA863N1 |
AC099849.4 finished |
32 | ABC12-47954900M11 Hschr18_5_ctg1_1 CONTAINED |
f12A47954900M11 |
AC221035.4 finished |
31 | RP11-863N1 Hschr18_5_ctg1_1 CONTAINER |
bA863N1 |
AC099849.4 finished |
GAP (type-3) length unknown | |||
34 | CTD-2015H3 HSCHR18_1_CTG1 |
bK2015H3 |
AP005057.2 finished |
35 | ABC10-43645600F20 HSCHR18_1_CTG1 |
f10A43645600F20 |
AC208950.3 finished |
36 | RP11-161I6 HSCHR18_1_CTG1 |
bA161I6 |
AP005481.2 finished |
AGP
Details
Component Sanger::HumPub::ChromoView failed to execute
Statistics
Clone Summary
- Number of gaps
- 9
- Gap types
- type-3
- 9
- Total clones
- 27
- Clone HTGS Phases
- finished
- 27
- Number of clones w/o accession
- 0
Overlap Summary
- Total overlap length of fin clones
- 426,150
- Total finished length of fin clones w/ overlap
- 3,008,024
- Total finished length of fin clones w/o overlap
- 2,581,874
- Total overlap length of fin+unfin clones
- 426,150
- Total finished length of fin+unfin clones w/ overlap
- 3,008,024
- Total finished length of fin+unfin clones w/o overlap
- 2,581,874
AGP errors
# | rank | accession | seq_start | seq_end | strand | error | date |
---|---|---|---|---|---|---|---|
1 | 15 | AC110597.7 | 61,046 | 180,310 | 1 | Cannot find overlap between container clone AC110597 and contained clone ABBA01056267 and contained clone AC231982 | Mon, 15 Jan 2018 23:26 |
Dovetails
# | rank | accession | status | length | date |
---|---|---|---|---|---|
1 | 5 | AC027216 | unfinished | 27,041 | Mon, 15 Jan 2018 23:26 |
2 | 8 | AC103951 | unfinished | 91,758 | Mon, 15 Jan 2018 23:26 |
3 | 11 | AC110597 | unfinished | 98,566 | Mon, 15 Jan 2018 23:26 |
4 | 16 | AC012572 | unfinished | 122,966 | Mon, 15 Jan 2018 23:26 |
5 | 19 | AC099689 | unfinished | 69,682 | Mon, 15 Jan 2018 23:26 |
6 | 22 | AC068473 | unfinished | 94,568 | Mon, 15 Jan 2018 23:26 |
7 | 26 | AC018517 | unfinished | 180,449 | Mon, 15 Jan 2018 23:26 |
8 | 31 | AC099849 | unfinished | 36,179 | Mon, 15 Jan 2018 23:26 |
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Other links
- Clones in Multiple TPFs
- Problems with ChromoView?
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