ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__1 (TPF updated: 2015-09-04)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 ABC13-48587700P3
Hschr1_1_ctg31
f13A48587700P3
AC217323.3
finished
2 RP11-216N14
Hschr1_1_ctg31
bA216N14
AL513523.33
finished
  GAP (type-3) length unknown    
4 ABC13-48559800H2
Hschr1_2_ctg31
f13A48559800H2
AC217785.3
finished
5 RP11-263K19
Hschr1_2_ctg31
bA263K19
AL713999.28
finished
  GAP (type-3) length unknown    
7 RP11-404H1
Hschr1_3_ctg31
bA404H1
AL450352.18
finished
8 ABC9-43902800P4
Hschr1_3_ctg31
f9A43902800P4
AC212752.2
finished
9 RP11-553K8
Hschr1_3_ctg31
CONTAINER
bA553K8
AL157402.19
finished
10
Hschr1_3_ctg31
CONTAINED
KF510707
KF510707.1
finished
9 RP11-553K8
Hschr1_3_ctg31
CONTAINER
bA553K8
AL157402.19
finished
  GAP (type-3) length unknown    
12 RP11-139L21
Hschr1_1_ctg32_1
bA139L21
AL359983.7
finished
13 RP11-477C23
Hschr1_1_ctg32_1
bA477C23
AC093153.2
finished
14 RP11-522M21
Hschr1_1_ctg32_1
CONTAINER
bA522M21
AC104462.1
finished
15 ABC9-43902500N11
Hschr1_1_ctg32_1
CONTAINED
f9A43902500N11
AC207442.4
finished
14 RP11-522M21
Hschr1_1_ctg32_1
CONTAINER
bA522M21
AC104462.1
finished
  GAP (type-3) length unknown    
17 RP4-591L5
Hschr1_1_ctg11
CONTAINER
dJ591L5
AL161638.10
finished
18 ABC9-44019900K23
Hschr1_1_ctg11
CONTAINED
f9A44019900K23
AC208814.2
finished
17 RP4-591L5
Hschr1_1_ctg11
CONTAINER
dJ591L5
AL161638.10
finished
  GAP (type-3) length unknown    
20 RP11-407H12
Hschr1_2_ctg32_1
CONTAINER
bA407H12
AC138089.2
finished
21
Hschr1_2_ctg32_1
CONTAINED
KF510723
KF510723.1
finished
20 RP11-407H12
Hschr1_2_ctg32_1
CONTAINER
bA407H12
AC138089.2
finished
22 DD0002SS3NU_L19
Hschr1_2_ctg32_1
CONTAINED
DD0002SS3NU_L19
AC240144.3
finished
20 RP11-407H12
Hschr1_2_ctg32_1
CONTAINER
bA407H12
AC138089.2
finished
  GAP (type-3) length unknown    
24 RP3-395M20
Hschr1_1_ctg3
dJ395M20
AL139246.21
finished
25 RP4-755G5
Hschr1_1_ctg3
dJ755G5
AL589746.11
finished
26 RP13-436F16
Hschr1_1_ctg3
CONTAINER
bB436F16
AL831784.17
finished
27 ABC12-49050800J17
Hschr1_1_ctg3
CONTAINED
f12A49050800J17
AC234231.3
finished
26 RP13-436F16
Hschr1_1_ctg3
CONTAINER
bB436F16
AL831784.17
finished
  GAP (type-2) length unknown    
29 ABC14-1188822O7
Hschr1_1_ctg3
f14A1188822O7
AC242022.2
finished
  GAP (type-3) length unknown    
31 RP11-261C10
Hschr1_3_ctg32_1
bA261C10
AL606534.15
finished
32 RP11-411G13
Hschr1_3_ctg32_1
CONTAINER
bA411G13
AC092782.2
finished
33
Hschr1_3_ctg32_1
CONTAINED
KF455178
KF455178.1
finished
32 RP11-411G13
Hschr1_3_ctg32_1
CONTAINER
bA411G13
AC092782.2
finished
34 RP11-156F12
Hschr1_3_ctg32_1
bA156F12
AC092806.2
finished
35 RP11-150L22
Hschr1_3_ctg32_1
bA150L22
AC096539.2
finished
36 RP11-269F20
Hschr1_3_ctg32_1
bA269F20
AL591721.7
finished
37 RP11-370K11
Hschr1_3_ctg32_1
bA370K11
AL662889.5
finished
38 RP11-351N5
Hschr1_3_ctg32_1
CONTAINER
bA351N5
AL592151.13
finished
39 ABC12-47020000H10
Hschr1_3_ctg32_1
CONTAINED
f12A47020000H10
AC225099.4
finished
38 RP11-351N5
Hschr1_3_ctg32_1
CONTAINER
bA351N5
AL592151.13
finished
  GAP (type-3) length unknown    
41 RP11-759N3
HSCHR1_4_CTG32_1
bA759N3
BX005090.4
finished
42 ABC10-44093400D8
HSCHR1_4_CTG32_1
f10A44093400D8
AC234425.2
finished
  GAP (type-3) length unknown    
44 CH17-164B4
Hschr1_4_ctg31
bMO164B4
AC253578.2
finished
45 RP5-1135M2
Hschr1_4_ctg31
dJ1135M2
AC006359.3
finished
  GAP (type-3) length unknown    
47 RP13-177J6
Hschr1_2_ctg3
bB177J6
CR854858.22
finished
48 CH17-223I5
Hschr1_2_ctg3
bMO223I5
AC244216.2
finished
  GAP (type-3) length unknown    
50 RP11-97C18
Hschr1_3_ctg3
CONTAINER
bA97C18
AL136455.6
finished
51 ABC9-43844400P22
Hschr1_3_ctg3
CONTAINED
f9A43844400P22
AC205875.2
finished
50 RP11-97C18
Hschr1_3_ctg3
CONTAINER
bA97C18
AL136455.6
finished
  GAP (type-3) length unknown    
53 RP5-1057J7
Hschr1_4_ctg3
CONTAINER
dJ1057J7
AL109936.11
finished
54 ABC9-46008800D8
Hschr1_4_ctg3
CONTAINED
f9A46008800D8
AC209232.3
finished
53 RP5-1057J7
Hschr1_4_ctg3
CONTAINER
dJ1057J7
AL109936.11
finished
55 RP4-654C18
Hschr1_4_ctg3
dJ654C18
AL357134.13
finished
56 RP1-150O5
Hschr1_4_ctg3
CONTAINER
dJ150O5
AL021154.1
finished
57
Hschr1_4_ctg3
CONTAINED
KF510725
KF510725.1
finished
56 RP1-150O5
Hschr1_4_ctg3
CONTAINER
dJ150O5
AL021154.1
finished
58
Hschr1_4_ctg3
CONTAINED
KF495899
KF495899.1
finished
56 RP1-150O5
Hschr1_4_ctg3
CONTAINER
dJ150O5
AL021154.1
finished
59
Hschr1_4_ctg3
CONTAINED
KF510726
KF510726.1
finished
56 RP1-150O5
Hschr1_4_ctg3
CONTAINER
dJ150O5
AL021154.1
finished
60
Hschr1_4_ctg3
CONTAINED
KF510724
KF510724.1
finished
56 RP1-150O5
Hschr1_4_ctg3
CONTAINER
dJ150O5
AL021154.1
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 38304 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC217323.3 1 38304 +
38305 182439 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL513523.33 6032 150166 +
182440 232439 3 N 50000 contig no
232440 272784 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC217785.3 1 40345 +
272785 342707 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL713999.28 63603 133525 +
342708 392707 6 N 50000 contig no
392708 523090 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AL450352.18 1 130383 +
523091 565608 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AC212752.2 1 42518 -
565609 680979 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AL157402.19 14654 130024 +
680980 681339 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 KF510707.1 1 360 +
681340 761287 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 11 AL157402.19 130384 210331 +
761288 811287 12 N 50000 contig no
811288 977541 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 AL359983.7 1 166254 +
977542 1051896 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 AC093153.2 96513 170867 +
1051897 1148627 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 AC104462.1 1 96731 +
1148628 1187336 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 AC207442.4 1 38709 -
1187337 1238888 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 AC104462.1 131720 183271 +
1238889 1288888 18 N 50000 contig no
1288889 1308900 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AL161638.10 1 20012 +
1308901 1348707 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC208814.2 1 39807 +
1348708 1398516 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AL161638.10 54703 104511 +
1398517 1448516 22 N 50000 contig no
1448517 1480060 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 AC138089.2 1 31544 +
1480061 1480444 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 KF510723.1 1 384 +
1480445 1492489 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 AC138089.2 31928 43972 +
1492490 1523964 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 AC240144.3 1 31475 +
1523965 1629570 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 AC138089.2 69382 174987 +
1629571 1679570 28 N 50000 contig no
1679571 1834306 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 33 AL139246.21 1 154736 +
1834307 1858116 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 33 AL589746.11 101 23910 +
1858117 1859482 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 33 AL831784.17 2001 3366 +
1859483 1900579 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 33 AC234231.3 1 41097 +
1900580 1944926 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 33 AL831784.17 35079 79425 +
1944927 1994926 34 N 50000 contig yes
1994927 2036014 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 AC242022.2 1 41088 +
2036015 2086014 36 N 50000 contig no
2086015 2269555 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 AL606534.15 1 183541 +
2269556 2350623 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 AC092782.2 59393 140460 +
2350624 2351013 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 KF455178.1 1 390 +
2351014 2365518 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 AC092782.2 140851 155355 +
2365519 2459530 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 AC092806.2 46745 140756 +
2459531 2642837 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 AC096539.2 1 183307 +
2642838 2723951 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 AL591721.7 2001 83114 +
2723952 2848987 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 AL662889.5 2001 127036 +
2848988 2918752 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 AL592151.13 2001 71765 +
2918753 2958547 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 AC225099.4 1 39795 +
2958548 2999671 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 47 AL592151.13 107222 148345 +
2999672 3049671 48 N 50000 contig no
3049672 3073522 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 BX005090.4 1 23851 +
3073523 3099929 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 AC234425.2 9856 36262 +
3099930 3149929 51 N 50000 contig no
3149930 3287834 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 53 AC253578.2 1 137905 +
3287835 3406564 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 53 AC006359.3 1 118730 -
3406565 3456564 54 N 50000 contig no
3456565 3624603 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 56 CR854858.22 1 168039 +
3624604 3712835 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 56 AC244216.2 1 88232 -
3712836 3762835 57 N 50000 contig no
3762836 3864407 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 60 AL136455.6 1 101572 +
3864408 3903034 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 60 AC205875.2 1 38627 -
3903035 3927683 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 60 AL136455.6 134922 159570 +
3927684 3977683 61 N 50000 contig no
3977684 3987881 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 AL109936.11 1 10198 +
3987882 4026616 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 AC209232.3 1 38735 +
4026617 4135432 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 AL109936.11 41470 150285 +
4135433 4199896 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 AL357134.13 2001 66464 +
4199897 4245276 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 AL021154.1 2001 47380 +
4245277 4245663 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 KF510725.1 1 387 -
4245664 4275899 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 AL021154.1 47767 78002 +
4275900 4276176 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 KF495899.1 1 277 +
4276177 4287754 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 AL021154.1 78280 89857 +
4287755 4287983 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 KF510726.1 1 229 -
4287984 4308349 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 AL021154.1 90086 110451 +
4308350 4308696 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 KF510724.1 1 347 -
4308697 4327621 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 74 AL021154.1 110798 129722 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
13
Gap types
type-2
1
type-3
12
Total clones
47
Clone HTGS Phases
finished
47
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
814,366
Total finished length of fin clones w/ overlap
4,475,756
Total finished length of fin clones w/o overlap
3,661,390
Total overlap length of fin+unfin clones
814,366
Total finished length of fin+unfin clones w/ overlap
4,475,756
Total finished length of fin+unfin clones w/o overlap
3,661,390

Dovetails

# rank accession status length date
1 5 AL713999.28 unfinished 39,107 Fri, 04 Sep 2015 23:01
2 7 AL450352.18 unfinished 9 Fri, 04 Sep 2015 23:01
3 9 AL157402.19 unfinished 79,948 Fri, 04 Sep 2015 23:01
4 14 AC104462.1 unfinished 51,552 Fri, 04 Sep 2015 23:01
5 17 AL161638.10 unfinished 20,012 Fri, 04 Sep 2015 23:01
6 20 AC138089.2 unfinished 143,060 Fri, 04 Sep 2015 23:01
7 26 AL831784.17 unfinished 44,347 Fri, 04 Sep 2015 23:01
8 32 AC092782.2 unfinished 14,505 Fri, 04 Sep 2015 23:01
9 38 AL592151.13 unfinished 41,124 Fri, 04 Sep 2015 23:01
10 44 AC253578.2 unfinished 1 Fri, 04 Sep 2015 23:01
11 56 AL021154.1 unfinished 81,956 Fri, 04 Sep 2015 23:01

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Other links

* quick link - http://q.sanger.ac.uk/dzdtdgd4