ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__10 (TPF updated: 2014-12-20)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-748L13
Hschr10_1_ctg1
CONTAINER
bA748L13
EPN details
AL355493.14
finished
2 ABC7-42397600G7
Hschr10_1_ctg1
CONTAINED
f7A42397600G7
AC231273.2
finished
3 ABC9-43904600C6
Hschr10_1_ctg1
CONTAINED
f9A43904600C6
AC226171.3
finished
1 RP11-748L13
Hschr10_1_ctg1
CONTAINER
bA748L13
EPN details
AL355493.14
finished
  GAP (type-3) length unknown    
5 RP11-432I13
Hschr10_1_ctg2
bA432I13
EPN details
AL512324.14
finished
6 ABC12-49066100D12
Hschr10_1_ctg2
f12A49066100D12
AC234305.3
finished
7 ABC12-46881100M7
Hschr10_1_ctg2
f12A46881100M7
AC234230.2
finished
8 RP11-67C2
Hschr10_1_ctg2
bA67C2
EPN details
AL731567.6
finished
  GAP (type-3) length unknown    
10 Y237C10
Hschr10_1_ctg3
CONTAINER
Y237C10
EPN details
AL031601.4
finished
11 1718H18
Hschr10_1_ctg3
CONTAINED
1718H18
AC238645.3
finished
10 Y237C10
Hschr10_1_ctg3
CONTAINER
Y237C10
EPN details
AL031601.4
finished
  GAP (type-3) length unknown    
13 RP13-39P12
Hschr10_1_ctg4
bB39P12
EPN details
AL450306.14
finished
14 RP11-126H7
Hschr10_1_ctg4
bA126H7
EPN details
AL391421.27
finished
15 ABC8-669122A10
Hschr10_1_ctg4
f8A669122A10
AC225822.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 30117 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL355493.14 1 30117 +
30118 64636 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AC231273.2 1 34519 -
64637 81120 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AC226171.3 1 16484 -
81121 181254 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL355493.14 33821 133954 +
181255 231254 5 N 50000 contig no
231255 380442 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 9 AL512324.14 1 149188 +
380443 419967 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 9 AC234305.3 1 39525 +
419968 445371 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 9 AC234230.2 1 25404 -
445372 543056 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 9 AL731567.6 31582 129266 +
543057 593056 10 N 50000 contig no
593057 664115 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL031601.4 1 71059 +
664116 701044 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AC238645.3 1 36929 -
701045 776552 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL031601.4 122193 197700 +
776553 826552 14 N 50000 contig no
826553 875089 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AL450306.14 1 48537 +
875090 998470 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AL391421.27 2001 125381 +
998471 1016867 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AC225822.3 25376 43772 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-748L13
Hschr10_1_ctg1
CONTAINER
bA748L13
EPN details
Submitted to EMBL
12-JAN-09
AL355493.14
finished
133954 RPCI-11.3 3' / 3'
30117 / 34519
100772 / -
34519
0.13
Identified
2014-11-12
agp2oracle
humpub
 
2 ABC7-42397600G7
Hschr10_1_ctg1
CONTAINED
f7A42397600G7
-
-
AC231273.2
finished
34519 ABC7 5' / 3'
1 / 16484
- / -
23715
0.24
Identified
2014-11-12
fetch_ncbi...
humpub
 
3 ABC9-43904600C6
Hschr10_1_ctg1
CONTAINED
f9A43904600C6
-
-
AC226171.3
finished
40200 ABC9 5' / 5'
1 / 33821
- / 33177
40200
0.94
Identified
2014-11-12
agp2oracle
humpub
Certificate approved
1 RP11-748L13
Hschr10_1_ctg1
CONTAINER
bA748L13
EPN details
Submitted to EMBL
12-JAN-09
AL355493.14
finished
133954 RPCI-11.3        
  GAP (type-3) length unknown                  
5 RP11-432I13
Hschr10_1_ctg2
bA432I13
EPN details
Submitted to EMBL
12-JAN-09
AL512324.14
finished
168473 RPCI-11.2 3' / 5'
149188 / 1
- / -
19267
0.48
Identified
2014-11-12
fetch_ncbi...
humpub
 
6 ABC12-49066100D12
Hschr10_1_ctg2
f12A49066100D12
-
-
AC234305.3
finished
39525 ABC12 3' / 3'
39525 / 25404
- / -
12849
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
7 ABC12-46881100M7
Hschr10_1_ctg2
f12A46881100M7
-
-
AC234230.2
finished
38253 ABC12 5' / 5'
1 / 31582
- / 1782
29759
1.13
Identified
2014-11-12
fetch_ncbi...
humpub
 
8 RP11-67C2
Hschr10_1_ctg2
bA67C2
EPN details
Submitted to EMBL
12-JAN-09
AL731567.6
finished
129266 RPCI-11.1        
  GAP (type-3) length unknown                  
10 Y237C10
Hschr10_1_ctg3
CONTAINER
Y237C10
EPN details
Submitted to EMBL
12-JAN-09
AL031601.4
finished
197700 - 3' / 3'
71059 / 36929
75508 / -
36929
46.45
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
11 1718H18
Hschr10_1_ctg3
CONTAINED
1718H18
-
-
AC238645.3
finished
36929 - 5' / 5'
1 / 122193
- / 71059
36929
46.45
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
10 Y237C10
Hschr10_1_ctg3
CONTAINER
Y237C10
EPN details
Submitted to EMBL
12-JAN-09
AL031601.4
finished
197700 -        
  GAP (type-3) length unknown                  
13 RP13-39P12
Hschr10_1_ctg4
bB39P12
EPN details
Submitted to EMBL
12-JAN-09
AL450306.14
finished
48537 RPCI-13.1 3' / 5'
48537 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
14 RP11-126H7
Hschr10_1_ctg4
bA126H7
EPN details
Submitted to EMBL
12-JAN-09
AL391421.27
finished
168239 RPCI-11.1 3' / 5'
125381 / 25376
42858 / -
25365
0.17
Identified
2014-11-12
fetch_ncbi...
humpub
 
15 ABC8-669122A10
Hschr10_1_ctg4
f8A669122A10
-
-
AC225822.3
finished
43772 ABC8        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
12
Clone HTGS Phases
finished
12
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
151,785
Total finished length of fin clones w/ overlap
1,079,367
Total finished length of fin clones w/o overlap
927,582
Total overlap length of fin+unfin clones
151,785
Total finished length of fin+unfin clones w/ overlap
1,079,367
Total finished length of fin+unfin clones w/o overlap
927,582

Dovetails

# rank accession status length date
1 1 AL355493.14 unfinished 30,117 Sat, 20 Dec 2014 23:05
2 8 AL731567.6 unfinished 1,782 Sat, 20 Dec 2014 23:05
3 10 AL031601.4 unfinished 75,508 Sat, 20 Dec 2014 23:05
4 14 AL391421.27 unfinished 42,858 Sat, 20 Dec 2014 23:05

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Other links

* quick link - http://q.sanger.ac.uk/henh6pcr