ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__7 (TPF updated: 2014-04-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP5-894A10
HSCHR7_1_CTG6
CONTAINER
dJ894A10
AC004918.1
finished
2 ABC10-44706000F12
HSCHR7_1_CTG6
CONTAINED
f10A44706000F12
AC211775.3
finished
1 RP5-894A10
HSCHR7_1_CTG6
CONTAINER
dJ894A10
AC004918.1
finished
  GAP (type-3) length unknown    
4 RP11-1220K2
HSCHR7_2_CTG6
bA1220K2
AC091742.5
finished
5 RP11-122A11
HSCHR7_2_CTG6
CONTAINER
bA122A11
AC231381.2
finished
6
HSCHR7_2_CTG6
CONTAINED
KF454889
KF454889.1
finished
5 RP11-122A11
HSCHR7_2_CTG6
CONTAINER
bA122A11
AC231381.2
finished
7 RP11-414D2
HSCHR7_2_CTG6
bA414D2
AC234635.3
finished
8 RP11-155E15
HSCHR7_2_CTG6
bA155E15
AC233282.3
finished
9 RP11-325O4
HSCHR7_2_CTG6
bA325O4
AC229888.2
finished
10 RP11-654L23
HSCHR7_2_CTG6
bA654L23
AC239612.3
finished
11 RP11-114B6
HSCHR7_2_CTG6
bA114B6
AC231380.2
finished
12 RP11-520H11
HSCHR7_2_CTG6
bA520H11
AC239618.4
finished
13 CH17-450A09
HSCHR7_2_CTG6
bMO450A09
AC245136.2
finished
  GAP (type-3) length unknown    
15 RP11-90P13
HSCHR7_1_CTG1
CONTAINER
bA90P13
AC093627.4
finished
16 RP1-164D18
HSCHR7_1_CTG1
CONTAINED
dJ164D18
AC093614.4
finished
15 RP11-90P13
HSCHR7_1_CTG1
CONTAINER
bA90P13
AC093627.4
finished
  GAP (type-3) length unknown    
18 RP11-11B21
HSCHR7_1_CTG7
CONTAINER
bA11B21
AC019043.8
finished
19 ABC16-1554O19
HSCHR7_1_CTG7
CONTAINED
f16A1554O19
AC238737.3
finished
18 RP11-11B21
HSCHR7_1_CTG7
CONTAINER
bA11B21
AC019043.8
finished
  GAP (type-3) length unknown    
21 RP11-401L13
HSCHR7_1_CTG4_4
CONTAINER
bA401L13
AC007683.5
finished
22 ABC13-48837000K15
HSCHR7_1_CTG4_4
CONTAINED
f13A48837000K15
AC216130.5
finished
21 RP11-401L13
HSCHR7_1_CTG4_4
CONTAINER
bA401L13
AC007683.5
finished
  GAP (type-3) length unknown    
24 RP4-782K24
HSCHR7_2_CTG7
CONTAINER
dJ782K24
AC006003.4
finished
25 ABC12-47947100F16
HSCHR7_2_CTG7
CONTAINED
f12A47947100F16
AC236756.3
finished
24 RP4-782K24
HSCHR7_2_CTG7
CONTAINER
dJ782K24
AC006003.4
finished
  GAP (type-3) length unknown    
27 RP11-519M4
HSCHR7_3_CTG6
bA519M4
AC073644.10
finished
28 ABC12-46817300G17
HSCHR7_3_CTG6
f12A46817300G17
AC237044.3
finished
29 RP11-163I18
HSCHR7_3_CTG6
CONTAINER
bA163I18
AC083849.6
finished
30
HSCHR7_3_CTG6
CONTAINED
KF458631
KF458631.1
finished
29 RP11-163I18
HSCHR7_3_CTG6
CONTAINER
bA163I18
AC083849.6
finished
  GAP (type-3) length unknown    
32 RP11-340A14
HSCHR7_2_CTG4_4
bA340A14
AC007078.4
finished
33 ABC16-1622M23
HSCHR7_2_CTG4_4
f16A1622M23
AC237298.3
finished
34 RP5-1158B1
HSCHR7_2_CTG4_4
dJ1158B1
AC004980.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 41723 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC004918.1 1 41723 +
41724 80161 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC211775.3 1 38438 +
80162 121379 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC004918.1 74154 115371 +
121380 171379 4 N 50000 contig no
171380 362420 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 AC091742.5 1 191041 +
362421 421869 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 AC231381.2 59786 119234 -
421870 422274 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 KF454889.1 1 405 +
422275 481654 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 AC231381.2 1 59380 -
481655 554988 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 AC234635.3 1 73334 -
554989 688726 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 AC233282.3 1 133738 -
688727 789124 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 AC229888.2 71948 172345 +
789125 906096 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 AC239612.3 1 116972 -
906097 953526 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 AC231380.2 1 47430 -
953527 1088022 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 AC239618.4 28942 163437 +
1088023 1282949 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 15 AC245136.2 1 194927 -
1282950 1332949 16 N 50000 contig no
1332950 1401767 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AC093627.4 1 68818 +
1401768 1474433 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AC093614.4 1 72666 +
1474434 1515523 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AC093627.4 138180 179269 +
1515524 1565523 20 N 50000 contig no
1565524 1713107 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 AC019043.8 1 147584 +
1713108 1751918 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 AC238737.3 1 38811 -
1751919 1777511 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 AC019043.8 186088 211680 +
1777512 1827511 24 N 50000 contig no
1827512 1902773 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AC007683.5 1 75262 +
1902774 1938760 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AC216130.5 1 35987 -
1938761 1985877 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AC007683.5 108619 155735 +
1985878 2035877 28 N 50000 contig no
2035878 2058871 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AC006003.4 1 22994 +
2058872 2097310 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AC236756.3 1 38439 +
2097311 2162511 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AC006003.4 58055 123255 +
2162512 2212511 32 N 50000 contig no
2212512 2370690 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 37 AC073644.10 1 158179 +
2370691 2412092 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 37 AC237044.3 1 41402 -
2412093 2441290 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 37 AC083849.6 54738 83935 +
2441291 2441394 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 37 KF458631.1 1 104 +
2441395 2485966 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 37 AC083849.6 84040 128611 +
2485967 2535966 38 N 50000 contig no
2535967 2538190 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC007078.4 12252 14475 -
2538191 2576876 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC237298.3 1 38686 -
2576877 2750500 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC004980.5 40117 213740 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP5-894A10
HSCHR7_1_CTG6
CONTAINER
dJ894A10
-
-
AC004918.1
finished
115371 RPCI-5 3' / 5'
41723 / 1
41218 / -
38438
18.58
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate approved
2 ABC10-44706000F12
HSCHR7_1_CTG6
CONTAINED
f10A44706000F12
-
-
AC211775.3
finished
38438 ABC10 3' / 5'
38438 / 74154
- / 41723
38438
18.58
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate approved
1 RP5-894A10
HSCHR7_1_CTG6
CONTAINER
dJ894A10
-
-
AC004918.1
finished
115371 RPCI-5        
  GAP (type-3) length unknown                  
4 RP11-1220K2
HSCHR7_2_CTG6
bA1220K2
-
-
AC091742.5
finished
191041 RPCI-11.5 3' / 3'
191041 / 119234
- / -
47824
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 RP11-122A11
HSCHR7_2_CTG6
CONTAINER
bA122A11
-
-
AC231381.2
finished
167059 RPCI-11.1 5' / 5'
59786 / 1
59380 / -
405
0.49
Identified
2014-04-09
fetch_ncbi...
humpub
 
6
HSCHR7_2_CTG6
CONTAINED
KF454889
-
-
KF454889.1
finished
405 - 3' / 3'
405 / 59380
- / 107274
405
0.49
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 RP11-122A11
HSCHR7_2_CTG6
CONTAINER
bA122A11
-
-
AC231381.2
finished
167059 RPCI-11.1 5' / 3'
1 / 73334
- / -
122631
0.29
Identified
2014-04-09
fetch_ncbi...
humpub
 
7 RP11-414D2
HSCHR7_2_CTG6
bA414D2
-
-
AC234635.3
finished
196019 RPCI-11.2 5' / 3'
1 / 133738
- / -
44246
0.27
Identified
2014-04-09
fetch_ncbi...
humpub
 
8 RP11-155E15
HSCHR7_2_CTG6
bA155E15
-
-
AC233282.3
finished
178002 RPCI-11.1 5' / 5'
1 / 71948
- / -
71925
0.26
Identified
2014-04-09
fetch_ncbi...
humpub
 
9 RP11-325O4
HSCHR7_2_CTG6
bA325O4
-
-
AC229888.2
finished
172345 RPCI-11.2 3' / 3'
172345 / 116972
- / -
70747
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
10 RP11-654L23
HSCHR7_2_CTG6
bA654L23
-
-
AC239612.3
finished
187719 RPCI-11.3 5' / 3'
1 / 47430
- / -
112320
1.46
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate approved
11 RP11-114B6
HSCHR7_2_CTG6
bA114B6
-
-
AC231380.2
finished
161204 RPCI-11.1 5' / 5'
1 / 28942
- / -
28941
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
12 RP11-520H11
HSCHR7_2_CTG6
bA520H11
-
-
AC239618.4
finished
163437 RPCI-11.2 3' / 3'
163437 / 194927
- / -
52053
0.4
Identified
2014-04-09
fetch_ncbi...
humpub
 
13 CH17-450A09
HSCHR7_2_CTG6
bMO450A09
-
-
AC245136.2
finished
247033 CHORI-17        
  GAP (type-3) length unknown                  
15 RP11-90P13
HSCHR7_1_CTG1
CONTAINER
bA90P13
-
-
AC093627.4
finished
179269 RPCI-11.1 3' / 5'
68818 / 1
41090 / -
72666
6.45
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
16 RP1-164D18
HSCHR7_1_CTG1
CONTAINED
dJ164D18
-
-
AC093614.4
finished
72666 RPCI-1 3' / 5'
72666 / 138180
- / 68818
72666
6.45
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
15 RP11-90P13
HSCHR7_1_CTG1
CONTAINER
bA90P13
-
-
AC093627.4
finished
179269 RPCI-11.1        
  GAP (type-3) length unknown                  
18 RP11-11B21
HSCHR7_1_CTG7
CONTAINER
bA11B21
-
-
AC019043.8
finished
211680 RPCI-11.1 3' / 3'
147584 / 38811
25593 / -
38811
4.11
Identified
2014-04-09
agp2oracle
humpub
Certificate submitted, not yet approved
19 ABC16-1554O19
HSCHR7_1_CTG7
CONTAINED
f16A1554O19
-
-
AC238737.3
finished
38811 ABC16 5' / 5'
1 / 186088
- / 147584
38811
4.11
Identified
2014-04-09
agp2oracle
humpub
Certificate submitted, not yet approved
18 RP11-11B21
HSCHR7_1_CTG7
CONTAINER
bA11B21
-
-
AC019043.8
finished
211680 RPCI-11.1        
  GAP (type-3) length unknown                  
21 RP11-401L13
HSCHR7_1_CTG4_4
CONTAINER
bA401L13
-
-
AC007683.5
finished
155735 RPCI-11.2 3' / 3'
75262 / 35987
47117 / -
35987
8.97
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
22 ABC13-48837000K15
HSCHR7_1_CTG4_4
CONTAINED
f13A48837000K15
-
-
AC216130.5
finished
35987 ABC13 5' / 5'
1 / 108619
- / 75262
35987
8.97
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
21 RP11-401L13
HSCHR7_1_CTG4_4
CONTAINER
bA401L13
-
-
AC007683.5
finished
155735 RPCI-11.2        
  GAP (type-3) length unknown                  
24 RP4-782K24
HSCHR7_2_CTG7
CONTAINER
dJ782K24
-
-
AC006003.4
finished
123255 RPCI-4 3' / 5'
22994 / 1
65201 / -
38439
13.9
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
25 ABC12-47947100F16
HSCHR7_2_CTG7
CONTAINED
f12A47947100F16
-
-
AC236756.3
finished
38439 ABC12 3' / 5'
38439 / 58055
- / 22994
38439
13.9
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
24 RP4-782K24
HSCHR7_2_CTG7
CONTAINER
dJ782K24
-
-
AC006003.4
finished
123255 RPCI-4        
  GAP (type-3) length unknown                  
27 RP11-519M4
HSCHR7_3_CTG6
bA519M4
-
-
AC073644.10
finished
174359 RPCI-11.2 3' / 3'
158179 / 41402
- / -
12702
27.86
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
28 ABC12-46817300G17
HSCHR7_3_CTG6
f12A46817300G17
-
-
AC237044.3
finished
41402 ABC12 5' / 5'
1 / 54738
- / 11803
39193
15.64
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
29 RP11-163I18
HSCHR7_3_CTG6
CONTAINER
bA163I18
-
-
AC083849.6
finished
128611 RPCI-11.1 3' / 5'
83935 / 1
44572 / -
104
0.96
Identified
2014-04-09
fetch_ncbi...
humpub
 
30
HSCHR7_3_CTG6
CONTAINED
KF458631
-
-
KF458631.1
finished
104 - 3' / 5'
104 / 84040
- / 83935
104
0.96
Identified
2014-04-09
fetch_ncbi...
humpub
 
29 RP11-163I18
HSCHR7_3_CTG6
CONTAINER
bA163I18
-
-
AC083849.6
finished
128611 RPCI-11.1        
  GAP (type-3) length unknown                  
32 RP11-340A14
HSCHR7_2_CTG4_4
bA340A14
-
-
AC007078.4
finished
14475 RPCI-11.2 5' / 3'
12252 / 38686
- / -
12245
0.83
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
33 ABC16-1622M23
HSCHR7_2_CTG4_4
f16A1622M23
-
-
AC237298.3
finished
38686 ABC16 5' / 5'
1 / 40117
- / -
27805
45.31
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
34 RP5-1158B1
HSCHR7_2_CTG4_4
dJ1158B1
-
-
AC004980.5
finished
213740 RPCI-5        

Statistics

Clone Summary

Number of gaps
7
Gap types
type-3
7
Total clones
27
Clone HTGS Phases
finished
27
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
727,754
Total finished length of fin clones w/ overlap
3,285,292
Total finished length of fin clones w/o overlap
2,557,538
Total overlap length of fin+unfin clones
727,754
Total finished length of fin+unfin clones w/ overlap
3,285,292
Total finished length of fin+unfin clones w/o overlap
2,557,538

Dovetails

# rank accession status length date
1 1 AC004918.1 unfinished 41,218 Thu, 24 Apr 2014 23:51
2 5 AC231381.2 unfinished 59,380 Thu, 24 Apr 2014 23:51
3 15 AC093627.4 unfinished 41,090 Thu, 24 Apr 2014 23:51
4 18 AC019043.8 unfinished 147,584 Thu, 24 Apr 2014 23:51
5 21 AC007683.5 unfinished 47,117 Thu, 24 Apr 2014 23:51
6 24 AC006003.4 unfinished 65,201 Thu, 24 Apr 2014 23:51
7 29 AC083849.6 unfinished 11,803 Thu, 24 Apr 2014 23:51
8 29 AC083849.6 unfinished 44,572 Thu, 24 Apr 2014 23:51

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Other links

* quick link - http://q.sanger.ac.uk/bgy2s8hx