ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__22 (TPF updated: 2014-10-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP1-186O1
Hschr22_1_ctg1
dJ186O1
EPN details
Z82192.1
finished
2 RP1-257I20
Hschr22_1_ctg1
dJ257I20
EPN details
AL021878.4
finished
3 RP4-597B2
Hschr22_1_ctg1
dJ597B2
EPN details
AL031346.8
finished
  GAP (type-3) length unknown    
5 CTA-150C2
Hschr22_1_ctg2
CONTAINER
bK150C2
EPN details
AL022318.2
finished
6
Hschr22_1_ctg2
CONTAINED
KF457458
KF457458.1
finished
5 CTA-150C2
Hschr22_1_ctg2
CONTAINER
bK150C2
EPN details
AL022318.2
finished
7
Hschr22_1_ctg2
CONTAINED
KF457455
KF457455.1
finished
5 CTA-150C2
Hschr22_1_ctg2
CONTAINER
bK150C2
EPN details
AL022318.2
finished
8 WI2-1043J20
Hschr22_1_ctg2
fW1043J20
AC192820.1
finished
  GAP (type-3) length unknown    
10 322F3
Hschr22_1_ctg3
322F3
AC009286.32
finished
11 CH17-242N13
Hschr22_1_ctg3
bMO242N13
AC246793.1
finished
  GAP (type-3) length unknown    
13 RP1-41P2
Hschr22_1_ctg4
CONTAINER
dJ41P2
EPN details
AL049748.2
finished
14 ABC24-1952N21
Hschr22_1_ctg4
CONTAINED
f24A1952N21
AC239364.3
finished
13 RP1-41P2
Hschr22_1_ctg4
CONTAINER
dJ41P2
EPN details
AL049748.2
finished
15 RP1-106I20
Hschr22_1_ctg4
CONTAINER
dJ106I20
EPN details
AL079295.1
finished
16
Hschr22_1_ctg4
CONTAINED
KF511452
KF511452.1
finished
15 RP1-106I20
Hschr22_1_ctg4
CONTAINER
dJ106I20
EPN details
AL079295.1
finished
17
Hschr22_1_ctg4
CONTAINED
KF510603
KF510603.1
finished
15 RP1-106I20
Hschr22_1_ctg4
CONTAINER
dJ106I20
EPN details
AL079295.1
finished
18
Hschr22_1_ctg4
CONTAINED
KF510602
KF510602.1
finished
15 RP1-106I20
Hschr22_1_ctg4
CONTAINER
dJ106I20
EPN details
AL079295.1
finished
19
Hschr22_1_ctg4
CONTAINED
KF457428
KF457428.1
finished
15 RP1-106I20
Hschr22_1_ctg4
CONTAINER
dJ106I20
EPN details
AL079295.1
finished
  GAP (type-3) length unknown    
21 CITF22-126G10
Hschr22_1_ctg5
fF126G10
EPN details
Z82184.1
finished
22 CITF22-24E5
Hschr22_1_ctg5
CONTAINER
fF24E5
EPN details
Z82185.1
finished
23
Hschr22_1_ctg5
CONTAINED
KF511454
KF511454.1
finished
22 CITF22-24E5
Hschr22_1_ctg5
CONTAINER
fF24E5
EPN details
Z82185.1
finished
24 ABC10-44079000E18
Hschr22_1_ctg5
f10A44079000E18
AC209618.3
finished
  GAP (type-3) length unknown    
26 KB-1269D1
Hschr22_1_ctg6
CONTAINER
KB1269D1
EPN details
AP000344.1
finished
27
Hschr22_1_ctg6
CONTAINED
KF457386
KF457386.1
finished
26 KB-1269D1
Hschr22_1_ctg6
CONTAINER
KB1269D1
EPN details
AP000344.1
finished
28 DD0002RKBNU_E11
Hschr22_1_ctg6
DD0002RKBNU_E11
AC239873.3
finished
  GAP (type-3) length unknown    
30 KB-1839H6
Hschr22_1_ctg7
KB1839H6
EPN details
AP000349.1
finished
31 KB-1125A3
Hschr22_1_ctg7
KB1125A3
EPN details
AP000350.1
finished
32 KB-226F1
Hschr22_1_ctg7
KB226F1
EPN details
AP000351.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 4504 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 Z82192.1 1 4504 +
4505 119250 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL021878.4 101 114846 +
119251 162911 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL031346.8 101 43761 +
162912 212911 4 N 50000 contig no
212912 238961 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 AL022318.2 1 26050 +
238962 239102 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 KF457458.1 1 141 +
239103 261743 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 AL022318.2 26192 48832 +
261744 262030 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 KF457455.1 1 287 -
262031 269182 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 AL022318.2 49120 56271 +
269183 309935 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 10 AC192820.1 1 40753 +
309936 359935 11 N 50000 contig no
359936 481806 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 13 AC009286.32 1 121871 +
481807 619849 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 13 AC246793.1 1 138043 -
619850 669849 14 N 50000 contig no
669850 705324 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 AL049748.2 1 35475 +
705325 744352 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 AC239364.3 1 39028 +
744353 784395 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 AL049748.2 68273 108315 +
784396 843647 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 AL079295.1 101 59352 +
843648 844090 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 KF511452.1 1 443 +
844091 846842 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 AL079295.1 59795 62546 +
846843 847151 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 KF510603.1 1 309 -
847152 887745 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 AL079295.1 62857 103450 +
887746 888110 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 KF510602.1 1 365 -
888111 896768 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 AL079295.1 103817 112474 +
896769 897039 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 KF457428.1 1 271 -
897040 933615 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 AL079295.1 112746 149321 +
933616 983615 27 N 50000 contig no
983616 1017832 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 32 Z82184.1 1 34217 +
1017833 1031663 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 32 Z82185.1 105 13935 +
1031664 1031972 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 32 KF511454.1 1 309 +
1031973 1053235 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 32 Z82185.1 14244 35506 +
1053236 1085050 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 32 AC209618.3 5422 37236 +
1085051 1135050 33 N 50000 contig no
1135051 1273931 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 37 AP000344.1 1 138881 +
1273932 1274047 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 37 KF457386.1 1 116 -
1274048 1319101 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 37 AP000344.1 138998 184051 +
1319102 1352227 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 37 AC239873.3 1 33126 -
1352228 1402227 38 N 50000 contig no
1402228 1450339 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AP000349.1 1 48112 +
1450340 1606873 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AP000350.1 5795 162328 +
1606874 1706362 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AP000351.3 19511 118999 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP1-186O1
Hschr22_1_ctg1
dJ186O1
EPN details
Submitted to EMBL
07-MAY-08
Z82192.1
finished
4504 RPCI-1 3' / 5'
4504 / 101
- / -
100
0
Identified
2014-10-23
fetch_ncbi...
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2 RP1-257I20
Hschr22_1_ctg1
dJ257I20
EPN details
Analysed
08-OCT-09
AL021878.4
finished
114846 RPCI-1 3' / 5'
114846 / 101
- / -
100
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
3 RP4-597B2
Hschr22_1_ctg1
dJ597B2
EPN details
Submitted to EMBL
06-MAY-99
AL031346.8
finished
43761 RPCI-4        
  GAP (type-3) length unknown                  
5 CTA-150C2
Hschr22_1_ctg2
CONTAINER
bK150C2
EPN details
Submitted to EMBL
12-JAN-09
AL022318.2
finished
201143 CIT978SK-A1 3' / 5'
26050 / 1
174952 / -
141
0.71
Identified
2014-10-23
fetch_ncbi...
humpub
 
6
Hschr22_1_ctg2
CONTAINED
KF457458
-
-
KF457458.1
finished
141 - 3' / 5'
141 / 26192
- / 26050
141
0.71
Identified
2014-10-23
fetch_ncbi...
humpub
 
5 CTA-150C2
Hschr22_1_ctg2
CONTAINER
bK150C2
EPN details
Submitted to EMBL
12-JAN-09
AL022318.2
finished
201143 CIT978SK-A1 3' / 3'
48832 / 287
152024 / -
287
0.35
Identified
2014-10-23
fetch_ncbi...
humpub
 
7
Hschr22_1_ctg2
CONTAINED
KF457455
-
-
KF457455.1
finished
287 - 5' / 5'
1 / 49120
- / 48832
287
0.35
Identified
2014-10-23
fetch_ncbi...
humpub
 
5 CTA-150C2
Hschr22_1_ctg2
CONTAINER
bK150C2
EPN details
Submitted to EMBL
12-JAN-09
AL022318.2
finished
201143 CIT978SK-A1 3' / 5'
56271 / 1
74176 / -
40748
73.57
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate approved
8 WI2-1043J20
Hschr22_1_ctg2
fW1043J20
-
-
AC192820.1
finished
40753 Whitehead fosmid        
  GAP (type-3) length unknown                  
10 322F3
Hschr22_1_ctg3
322F3
-
-
AC009286.32
finished
121871 - 3' / 3'
121871 / 138043
- / -
75038
0.14
Identified
2014-10-23
fetch_ncbi...
humpub
 
11 CH17-242N13
Hschr22_1_ctg3
bMO242N13
-
-
AC246793.1
finished
213099 CHORI-17        
  GAP (type-3) length unknown                  
13 RP1-41P2
Hschr22_1_ctg4
CONTAINER
dJ41P2
EPN details
Submitted to EMBL
12-JAN-09
AL049748.2
finished
108315 RPCI-1 3' / 5'
35475 / 1
40043 / -
39028
19.19
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate approved
14 ABC24-1952N21
Hschr22_1_ctg4
CONTAINED
f24A1952N21
-
-
AC239364.3
finished
39028 ABC24 3' / 5'
39028 / 68273
- / 35475
39028
19.19
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate approved
13 RP1-41P2
Hschr22_1_ctg4
CONTAINER
dJ41P2
EPN details
Submitted to EMBL
12-JAN-09
AL049748.2
finished
108315 RPCI-1 3' / 5'
108315 / 101
- / -
100
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
15 RP1-106I20
Hschr22_1_ctg4
CONTAINER
dJ106I20
EPN details
Submitted to EMBL
12-JAN-09
AL079295.1
finished
149321 RPCI-1 3' / 5'
59352 / 1
89527 / -
443
0.23
Identified
2014-10-23
fetch_ncbi...
humpub
 
16
Hschr22_1_ctg4
CONTAINED
KF511452
-
-
KF511452.1
finished
443 - 3' / 5'
443 / 59795
- / 59352
443
0.23
Identified
2014-10-23
fetch_ncbi...
humpub
 
15 RP1-106I20
Hschr22_1_ctg4
CONTAINER
dJ106I20
EPN details
Submitted to EMBL
12-JAN-09
AL079295.1
finished
149321 RPCI-1 3' / 3'
62546 / 309
86465 / -
309
0.32
Identified
2014-10-23
fetch_ncbi...
humpub
 
17
Hschr22_1_ctg4
CONTAINED
KF510603
-
-
KF510603.1
finished
309 - 5' / 5'
1 / 62857
- / 62546
309
0.32
Identified
2014-10-23
fetch_ncbi...
humpub
 
15 RP1-106I20
Hschr22_1_ctg4
CONTAINER
dJ106I20
EPN details
Submitted to EMBL
12-JAN-09
AL079295.1
finished
149321 RPCI-1 3' / 3'
103450 / 365
45505 / -
365
0.27
Identified
2014-10-23
fetch_ncbi...
humpub
 
18
Hschr22_1_ctg4
CONTAINED
KF510602
-
-
KF510602.1
finished
365 - 5' / 5'
1 / 103817
- / 103450
365
0.27
Identified
2014-10-23
fetch_ncbi...
humpub
 
15 RP1-106I20
Hschr22_1_ctg4
CONTAINER
dJ106I20
EPN details
Submitted to EMBL
12-JAN-09
AL079295.1
finished
149321 RPCI-1 3' / 3'
112474 / 271
36576 / -
271
0.37
Identified
2014-10-23
fetch_ncbi...
humpub
 
19
Hschr22_1_ctg4
CONTAINED
KF457428
-
-
KF457428.1
finished
271 - 5' / 5'
1 / 112746
- / 112474
271
0.37
Identified
2014-10-23
fetch_ncbi...
humpub
 
15 RP1-106I20
Hschr22_1_ctg4
CONTAINER
dJ106I20
EPN details
Submitted to EMBL
12-JAN-09
AL079295.1
finished
149321 RPCI-1        
  GAP (type-3) length unknown                  
21 CITF22-126G10
Hschr22_1_ctg5
fF126G10
EPN details
Submitted to EMBL
07-MAY-08
Z82184.1
finished
34217 CITF22 3' / 5'
34217 / 105
- / -
104
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
22 CITF22-24E5
Hschr22_1_ctg5
CONTAINER
fF24E5
EPN details
Submitted to EMBL
12-JAN-09
Z82185.1
finished
35506 CITF22 3' / 5'
13935 / 1
21263 / -
309
0.32
Identified
2014-10-23
agp2oracle
humpub
 
23
Hschr22_1_ctg5
CONTAINED
KF511454
-
-
KF511454.1
finished
309 - 3' / 5'
309 / 14244
- / 13935
309
0.32
Identified
2014-10-23
agp2oracle
humpub
 
22 CITF22-24E5
Hschr22_1_ctg5
CONTAINER
fF24E5
EPN details
Submitted to EMBL
12-JAN-09
Z82185.1
finished
35506 CITF22 3' / 5'
35506 / 5422
- / -
5419
0.26
Identified
2014-10-23
fetch_ncbi...
humpub
 
24 ABC10-44079000E18
Hschr22_1_ctg5
f10A44079000E18
-
-
AC209618.3
finished
37236 ABC10        
  GAP (type-3) length unknown                  
26 KB-1269D1
Hschr22_1_ctg6
CONTAINER
KB1269D1
EPN details
Externally Finished
21-JAN-13
AP000344.1
finished
186421 KB 3' / 3'
138881 / 116
47424 / -
116
0.86
Identified
2014-10-23
fetch_ncbi...
humpub
 
27
Hschr22_1_ctg6
CONTAINED
KF457386
-
-
KF457386.1
finished
116 - 5' / 5'
1 / 138998
- / 138881
116
0.86
Identified
2014-10-23
fetch_ncbi...
humpub
 
26 KB-1269D1
Hschr22_1_ctg6
CONTAINER
KB1269D1
EPN details
Externally Finished
21-JAN-13
AP000344.1
finished
186421 KB 3' / 3'
184051 / 33126
- / -
2361
0.67
Identified
2014-10-23
fetch_ncbi...
humpub
 
28 DD0002RKBNU_E11
Hschr22_1_ctg6
DD0002RKBNU_E11
-
-
AC239873.3
finished
33126 -        
  GAP (type-3) length unknown                  
30 KB-1839H6
Hschr22_1_ctg7
KB1839H6
EPN details
Externally Finished
21-JAN-13
AP000349.1
finished
48112 KB 3' / 5'
48112 / 5795
- / -
5794
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
31 KB-1125A3
Hschr22_1_ctg7
KB1125A3
EPN details
Externally Finished
21-JAN-13
AP000350.1
finished
162328 KB 3' / 5'
162328 / 19511
- / -
19510
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
32 KB-226F1
Hschr22_1_ctg7
KB226F1
EPN details
Externally Finished
21-JAN-13
AP000351.3
finished
118999 KB        

Statistics

Clone Summary

Number of gaps
6
Gap types
type-3
6
Total clones
26
Clone HTGS Phases
finished
26
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
134,438
Total finished length of fin clones w/ overlap
1,694,827
Total finished length of fin clones w/o overlap
1,560,389
Total overlap length of fin+unfin clones
134,438
Total finished length of fin+unfin clones w/ overlap
1,694,827
Total finished length of fin+unfin clones w/o overlap
1,560,389

Dovetails

# rank accession status length date
1 5 AL022318.2 unfinished 174,952 Wed, 22 Oct 2014 23:50
2 13 AL049748.2 unfinished 40,043 Wed, 22 Oct 2014 23:50
3 15 AL079295.1 unfinished 89,527 Wed, 22 Oct 2014 23:50
4 22 Z82185.1 unfinished 21,263 Wed, 22 Oct 2014 23:50
5 26 AP000344.1 unfinished 47,424 Wed, 22 Oct 2014 23:50

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Other links

* quick link - http://q.sanger.ac.uk/k53ywhys