ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__4 (TPF updated: 2014-10-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-4I17
HSCHR4_1_CTG9
bA4I17
AC074378.4
finished
2 RP11-806A6
HSCHR4_1_CTG9
bA806A6
AC140484.1
finished
3 RP11-185H6
HSCHR4_1_CTG9
bA185H6
AC019173.4
finished
4 RP11-796B8
HSCHR4_1_CTG9
bA796B8
AC226496.2
finished
5 RP11-468N14
HSCHR4_1_CTG9
bA468N14
AC021146.7
finished
  GAP (type-3) length unknown    
7 RP11-725M22
HSCHR4_1_CTG6
bA725M22
AC093689.4
finished
8 ABC12-7921349P3
HSCHR4_1_CTG6
f12A7921349P3
AC234439.3
finished
9 RP11-768G3
HSCHR4_1_CTG6
bA768G3
AC093913.2
finished
  GAP (type-3) length unknown    
11 RP11-401G24
HSCHR4_1_CTG12
CONTAINER
bA401G24
AC093830.3
finished
12 ABC11-48007900M2
HSCHR4_1_CTG12
CONTAINED
f11A48007900M2
AC216823.4
finished
11 RP11-401G24
HSCHR4_1_CTG12
CONTAINER
bA401G24
AC093830.3
finished
  GAP (type-3) length unknown    
14 RP11-217E13
HSCHR4_2_CTG12
CONTAINER
bA217E13
AC110772.3
finished
15 ABC16-2112P19
HSCHR4_2_CTG12
CONTAINED
f16A2112P19
AC238651.3
finished
14 RP11-217E13
HSCHR4_2_CTG12
CONTAINER
bA217E13
AC110772.3
finished
  GAP (type-3) length unknown    
17 RP11-463J17
HSCHR4_3_CTG12
CONTAINER
bA463J17
AF250324.1
finished
18 ABC10-44454900K2
HSCHR4_3_CTG12
CONTAINED
f10A44454900K2
AC212995.3
finished
17 RP11-463J17
HSCHR4_3_CTG12
CONTAINER
bA463J17
AF250324.1
finished
  GAP (type-3) length unknown    
20 RP11-245L10
HSCHR4_1_CTG8_1
CONTAINER
bA245L10
AC113152.4
finished
21 ABC9-43826900C1
HSCHR4_1_CTG8_1
CONTAINED
f9A43826900C1
AC220966.3
finished
20 RP11-245L10
HSCHR4_1_CTG8_1
CONTAINER
bA245L10
AC113152.4
finished
  GAP (type-3) length unknown    
23 RP11-44D21
HSCHR4_4_CTG12
CONTAINER
bA44D21
AC108866.5
finished
24 RP11-273F23
HSCHR4_4_CTG12
CONTAINED
bA273F23
AC104652.3
finished
23 RP11-44D21
HSCHR4_4_CTG12
CONTAINER
bA44D21
AC108866.5
finished
  GAP (type-3) length unknown    
26 RP11-219G10
HSCHR4_5_CTG12
CONTAINER
bA219G10
AC093789.3
finished
27 ABC9-43873700P18
HSCHR4_5_CTG12
CONTAINED
f9A43873700P18
AC208866.4
finished
26 RP11-219G10
HSCHR4_5_CTG12
CONTAINER
bA219G10
AC093789.3
finished
  GAP (type-3) length unknown    
29 RP11-556G22
HSCHR4_1_CTG4
CONTAINER
bA556G22
AC096576.3
finished
30 ABC12-46665400H16
HSCHR4_1_CTG4
CONTAINED
f12A46665400H16
AC210756.2
finished
29 RP11-556G22
HSCHR4_1_CTG4
CONTAINER
bA556G22
AC096576.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 53471 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC074378.4 1 53471 +
53472 154355 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC140484.1 1 100884 +
154356 335472 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC019173.4 1 181117 -
335473 508080 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC226496.2 5169 177776 +
508081 590474 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC021146.7 1 82394 -
590475 640474 6 N 50000 contig no
640475 794439 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AC093689.4 1 153965 +
794440 834296 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AC234439.3 1 39857 -
834297 1018661 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AC093913.2 7695 192059 +
1018662 1068661 10 N 50000 contig no
1068662 1171715 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AC093830.3 1 103054 +
1171716 1212240 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AC216823.4 1 40525 -
1212241 1235197 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AC093830.3 130931 153887 +
1235198 1285197 14 N 50000 contig no
1285198 1363399 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AC110772.3 1 78202 +
1363400 1402392 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AC238651.3 1 38993 +
1402393 1469485 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AC110772.3 124954 192046 +
1469486 1519485 18 N 50000 contig no
1519486 1679303 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AF250324.1 1 159818 +
1679304 1713387 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC212995.3 1 34084 +
1713388 1768665 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AF250324.1 190431 245708 +
1768666 1818665 22 N 50000 contig no
1818666 1859984 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AC113152.4 1 41319 +
1859985 1898601 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AC220966.3 1 38617 +
1898602 1932608 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 AC113152.4 75653 109659 +
1932609 1982608 26 N 50000 contig no
1982609 1997190 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 AC108866.5 1 14582 +
1997191 2127396 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 AC104652.3 1 130206 +
2127397 2141579 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 AC108866.5 138640 152822 +
2141580 2191579 30 N 50000 contig no
2191580 2326721 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 AC093789.3 1 135142 +
2326722 2365115 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 AC208866.4 1 38394 +
2365116 2399523 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 AC093789.3 168530 202937 +
2399524 2449523 34 N 50000 contig no
2449524 2491907 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 AC096576.3 1 42384 +
2491908 2533415 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 AC210756.2 1 41508 +
2533416 2669769 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 AC096576.3 76691 213044 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-4I17
HSCHR4_1_CTG9
bA4I17
-
-
AC074378.4
finished
154112 RPCI-11.1 3' / 5'
53471 / 1
- / -
100609
0.29
Identified
2014-10-23
fetch_ncbi...
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2 RP11-806A6
HSCHR4_1_CTG9
bA806A6
-
-
AC140484.1
finished
102884 RPCI-11.3 3' / 3'
100884 / 181117
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
3 RP11-185H6
HSCHR4_1_CTG9
bA185H6
-
-
AC019173.4
finished
181117 RPCI-11.1 5' / 5'
1 / 5169
- / -
5165
0.25
Identified
2014-10-23
fetch_ncbi...
humpub
 
4 RP11-796B8
HSCHR4_1_CTG9
bA796B8
-
-
AC226496.2
finished
177776 RPCI-11.3 3' / 3'
177776 / 82394
- / -
135597
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
5 RP11-468N14
HSCHR4_1_CTG9
bA468N14
-
-
AC021146.7
finished
217991 RPCI-11.2        
  GAP (type-3) length unknown                  
7 RP11-725M22
HSCHR4_1_CTG6
bA725M22
-
-
AC093689.4
finished
167590 RPCI-11.3 3' / 3'
153965 / 39857
- / -
13608
0.39
Identified
2014-10-23
fetch_ncbi...
humpub
 
8 ABC12-7921349P3
HSCHR4_1_CTG6
f12A7921349P3
-
-
AC234439.3
finished
39857 ABC12 5' / 5'
1 / 7695
- / -
7681
0.87
Identified
2014-10-23
fetch_ncbi...
humpub
 
9 RP11-768G3
HSCHR4_1_CTG6
bA768G3
-
-
AC093913.2
finished
192059 RPCI-11.3        
  GAP (type-3) length unknown                  
11 RP11-401G24
HSCHR4_1_CTG12
CONTAINER
bA401G24
-
-
AC093830.3
finished
153887 RPCI-11.2 3' / 3'
103054 / 40525
22957 / -
40525
45.64
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
12 ABC11-48007900M2
HSCHR4_1_CTG12
CONTAINED
f11A48007900M2
-
-
AC216823.4
finished
40525 ABC11 5' / 5'
1 / 130931
- / 103054
40525
45.64
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
11 RP11-401G24
HSCHR4_1_CTG12
CONTAINER
bA401G24
-
-
AC093830.3
finished
153887 RPCI-11.2        
  GAP (type-3) length unknown                  
14 RP11-217E13
HSCHR4_2_CTG12
CONTAINER
bA217E13
-
-
AC110772.3
finished
192046 RPCI-11.1 3' / 5'
78202 / 1
67093 / -
38993
22.45
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
15 ABC16-2112P19
HSCHR4_2_CTG12
CONTAINED
f16A2112P19
-
-
AC238651.3
finished
38993 ABC16 3' / 5'
38993 / 124954
- / 78202
38993
22.45
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
14 RP11-217E13
HSCHR4_2_CTG12
CONTAINER
bA217E13
-
-
AC110772.3
finished
192046 RPCI-11.1        
  GAP (type-3) length unknown                  
17 RP11-463J17
HSCHR4_3_CTG12
CONTAINER
bA463J17
-
-
AF250324.1
finished
245708 RPCI-11.2 3' / 5'
159818 / 1
55278 / -
34084
12.58
Identified
2014-10-23
agp2oracle
humpub
Certificate submitted, not yet approved
18 ABC10-44454900K2
HSCHR4_3_CTG12
CONTAINED
f10A44454900K2
-
-
AC212995.3
finished
34084 ABC10 3' / 5'
34084 / 190431
- / 159818
34084
12.58
Identified
2014-10-23
agp2oracle
humpub
Certificate submitted, not yet approved
17 RP11-463J17
HSCHR4_3_CTG12
CONTAINER
bA463J17
-
-
AF250324.1
finished
245708 RPCI-11.2        
  GAP (type-3) length unknown                  
20 RP11-245L10
HSCHR4_1_CTG8_1
CONTAINER
bA245L10
-
-
AC113152.4
finished
109659 RPCI-11.1 3' / 5'
41319 / 1
34007 / -
38617
12.61
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
21 ABC9-43826900C1
HSCHR4_1_CTG8_1
CONTAINED
f9A43826900C1
-
-
AC220966.3
finished
38617 ABC9 3' / 5'
38617 / 75653
- / 41319
38617
12.61
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
20 RP11-245L10
HSCHR4_1_CTG8_1
CONTAINER
bA245L10
-
-
AC113152.4
finished
109659 RPCI-11.1        
  GAP (type-3) length unknown                  
23 RP11-44D21
HSCHR4_4_CTG12
CONTAINER
bA44D21
-
-
AC108866.5
finished
152822 RPCI-11.1 3' / 5'
14582 / 1
14183 / -
130206
5.18
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
24 RP11-273F23
HSCHR4_4_CTG12
CONTAINED
bA273F23
-
-
AC104652.3
finished
130206 RPCI-11.1 3' / 5'
130206 / 138640
- / 14582
130206
5.18
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
23 RP11-44D21
HSCHR4_4_CTG12
CONTAINER
bA44D21
-
-
AC108866.5
finished
152822 RPCI-11.1        
  GAP (type-3) length unknown                  
26 RP11-219G10
HSCHR4_5_CTG12
CONTAINER
bA219G10
-
-
AC093789.3
finished
202937 RPCI-11.1 3' / 5'
135142 / 1
34408 / -
38394
18.46
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
27 ABC9-43873700P18
HSCHR4_5_CTG12
CONTAINED
f9A43873700P18
-
-
AC208866.4
finished
38394 ABC9 3' / 5'
38394 / 168530
- / 135142
38394
18.46
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
26 RP11-219G10
HSCHR4_5_CTG12
CONTAINER
bA219G10
-
-
AC093789.3
finished
202937 RPCI-11.1        
  GAP (type-3) length unknown                  
29 RP11-556G22
HSCHR4_1_CTG4
CONTAINER
bA556G22
-
-
AC096576.3
finished
213044 RPCI-11.2 3' / 5'
42384 / 1
136354 / -
41508
21.38
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
30 ABC12-46665400H16
HSCHR4_1_CTG4
CONTAINED
f12A46665400H16
-
-
AC210756.2
finished
41508 ABC12 3' / 5'
41508 / 76691
- / 42384
41508
21.38
Identified
2014-10-23
fetch_ncbi...
humpub
Certificate submitted, not yet approved
29 RP11-556G22
HSCHR4_1_CTG4
CONTAINER
bA556G22
-
-
AC096576.3
finished
213044 RPCI-11.2        

Statistics

Clone Summary

Number of gaps
8
Gap types
type-3
8
Total clones
22
Clone HTGS Phases
finished
22
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
587,706
Total finished length of fin clones w/ overlap
2,865,816
Total finished length of fin clones w/o overlap
2,278,110
Total overlap length of fin+unfin clones
587,706
Total finished length of fin+unfin clones w/ overlap
2,865,816
Total finished length of fin+unfin clones w/o overlap
2,278,110

Dovetails

# rank accession status length date
1 11 AC093830.3 unfinished 22,957 Wed, 22 Oct 2014 23:59
2 14 AC110772.3 unfinished 67,093 Wed, 22 Oct 2014 23:59
3 17 AF250324.1 unfinished 159,818 Wed, 22 Oct 2014 23:59
4 20 AC113152.4 unfinished 34,007 Wed, 22 Oct 2014 23:59
5 23 AC108866.5 unfinished 14,183 Wed, 22 Oct 2014 23:59
6 26 AC093789.3 unfinished 34,408 Wed, 22 Oct 2014 23:59
7 29 AC096576.3 unfinished 136,354 Wed, 22 Oct 2014 23:59

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Other links

* quick link - http://q.sanger.ac.uk/96yvofp9