ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__15 (TPF updated: 2014-07-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-483E23
HSCHR15_1_CTG8
bA483E23
AC091304.15
finished
2 RP11-147B8
HSCHR15_1_CTG8
bA147B8
AC138747.3
finished
3 RP11-536P16
HSCHR15_1_CTG8
bA536P16
AC138749.6
finished
  GAP (type-3) length unknown    
5 RP11-348J6
HSCHR15_2_CTG8
bA348J6
AC011847.9
finished
6 ABC9-44044400N8
HSCHR15_2_CTG8
f9A44044400N8
AC209298.3
finished
7 RP11-653J6
HSCHR15_2_CTG8
CONTAINER
bA653J6
AC087382.11
finished
8
HSCHR15_2_CTG8
CONTAINED
KF456072
KF456072.1
finished
7 RP11-653J6
HSCHR15_2_CTG8
CONTAINER
bA653J6
AC087382.11
finished
  GAP (type-3) length unknown    
10 RP11-1081C20
HSCHR15_1_CTG3
bA1081C20
AC135069.17
finished
11 RP11-467N20
HSCHR15_1_CTG3
bA467N20
AC116165.8
finished
  GAP (type-3) length unknown    
13 RP11-292P13
HSCHR15_3_CTG8
bA292P13
AC018901.8
finished
14 CTD-2163N2
HSCHR15_3_CTG8
bK2163N2
AC120778.2
finished
  GAP (type-3) length unknown    
16 RP13-98N21
HSCHR15_5_CTG8
bB98N21
AC126339.6
finished
17 RP11-96J23
HSCHR15_5_CTG8
bA96J23
AC011295.3
finished
18 RP11-152F13
HSCHR15_5_CTG8
bA152F13
AC010724.6
finished
19 RP11-379H8
HSCHR15_5_CTG8
bA379H8
AC110291.7
finished
  GAP (type-3) length unknown    
21 RP11-439M15
HSCHR15_3_CTG3
bA439M15
AC136687.6
finished
22 RP11-291O21
HSCHR15_3_CTG3
bA291O21
AC025138.14
finished
23 RP11-228M15
HSCHR15_3_CTG3
bA228M15
AC091565.10
finished
  GAP (type-3) length unknown    
25 RP11-32B5
HSCHR15_1_CTG1
bA32B5
AC068446.22
finished
26 RP11-116P24
HSCHR15_1_CTG1
bA116P24
AC136352.10
finished
27 RP11-11H9
HSCHR15_1_CTG1
bA11H9
AC020679.7
finished
28 RP11-983G14
HSCHR15_1_CTG1
bA983G14
AC171558.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 53862 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC091304.15 1 53862 +
53863 212278 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC138747.3 1 158416 +
212279 327780 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC138749.6 1 115502 -
327781 377780 4 N 50000 contig no
377781 553140 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AC011847.9 3503 178862 -
553141 595678 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AC209298.3 1 42538 +
595679 645181 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AC087382.11 123666 173168 -
645182 645555 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 KF456072.1 1 374 +
645556 768846 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AC087382.11 1 123291 -
768847 818846 10 N 50000 contig no
818847 1041572 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AC135069.17 1 222726 +
1041573 1146228 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AC116165.8 1 104656 -
1146229 1196228 13 N 50000 contig no
1196229 1395731 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 AC018901.8 1 199503 +
1395732 1441145 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 AC120778.2 67869 113282 +
1441146 1491145 16 N 50000 contig no
1491146 1586632 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AC126339.6 1 95487 +
1586633 1701619 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AC011295.3 1 114987 -
1701620 1838651 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AC010724.6 1 137032 -
1838652 1922025 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AC110291.7 34108 117481 +
1922026 1972025 21 N 50000 contig no
1972026 2152733 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AC136687.6 1 180708 -
2152734 2232178 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AC025138.14 1 79445 -
2232179 2308470 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AC091565.10 1 76292 -
2308471 2358470 25 N 50000 contig no
2358471 2389221 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 29 AC068446.22 127715 158465 -
2389222 2566476 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 29 AC136352.10 1 177255 -
2566477 2693790 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 29 AC020679.7 1 127314 -
2693791 2837469 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 29 AC171558.2 1 143679 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-483E23
HSCHR15_1_CTG8
bA483E23
-
-
AC091304.15
finished
179218 RPCI-11.2 3' / 5'
53862 / 1
- / -
125148
9.93
Identified
2014-07-24
fetch_ncbi...
humpub
Certificate submitted, not yet approved
2 RP11-147B8
HSCHR15_1_CTG8
bA147B8
-
-
AC138747.3
finished
158416 RPCI-11.1 3' / 3'
158416 / 115502
- / -
45873
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
3 RP11-536P16
HSCHR15_1_CTG8
bA536P16
-
-
AC138749.6
finished
161376 RPCI-11.2        
  GAP (type-3) length unknown                  
5 RP11-348J6
HSCHR15_2_CTG8
bA348J6
-
-
AC011847.9
finished
178862 RPCI-11.2 5' / 5'
3503 / 1
- / -
3484
0.84
Identified
2014-07-24
fetch_ncbi...
humpub
 
6 ABC9-44044400N8
HSCHR15_2_CTG8
f9A44044400N8
-
-
AC209298.3
finished
42538 ABC9 3' / 3'
42538 / 173168
- / 24064
30380
40.25
Identified
2014-07-24
fetch_ncbi...
humpub
Certificate submitted, not yet approved
7 RP11-653J6
HSCHR15_2_CTG8
CONTAINER
bA653J6
-
-
AC087382.11
finished
227632 RPCI-11.3 5' / 5'
123666 / 1
123291 / -
374
0.27
Identified
2014-07-24
fetch_ncbi...
humpub
 
8
HSCHR15_2_CTG8
CONTAINED
KF456072
-
-
KF456072.1
finished
374 - 3' / 3'
374 / 123291
- / 103967
374
0.27
Identified
2014-07-24
fetch_ncbi...
humpub
 
7 RP11-653J6
HSCHR15_2_CTG8
CONTAINER
bA653J6
-
-
AC087382.11
finished
227632 RPCI-11.3        
  GAP (type-3) length unknown                  
10 RP11-1081C20
HSCHR15_1_CTG3
bA1081C20
-
-
AC135069.17
finished
222726 RPCI-11.4 3' / 3'
222726 / 104656
- / -
75629
1.48
Identified
2014-07-24
fetch_ncbi...
humpub
Certificate submitted, not yet approved
11 RP11-467N20
HSCHR15_1_CTG3
bA467N20
-
-
AC116165.8
finished
180405 RPCI-11.2        
  GAP (type-3) length unknown                  
13 RP11-292P13
HSCHR15_3_CTG8
bA292P13
-
-
AC018901.8
finished
199503 RPCI-11.2 3' / 5'
199503 / 67869
- / -
67804
11.6
Identified
2014-07-24
fetch_ncbi...
humpub
Certificate submitted, not yet approved
14 CTD-2163N2
HSCHR15_3_CTG8
bK2163N2
-
-
AC120778.2
finished
113282 CIT-HSP-D1        
  GAP (type-3) length unknown                  
16 RP13-98N21
HSCHR15_5_CTG8
bB98N21
-
-
AC126339.6
finished
95499 RPCI-13.1 3' / 3'
95487 / 114987
- / -
33704
0.11
Identified
2014-07-24
fetch_ncbi...
humpub
 
17 RP11-96J23
HSCHR15_5_CTG8
bA96J23
-
-
AC011295.3
finished
148698 RPCI-11.1 5' / 3'
1 / 137032
- / -
20167
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
18 RP11-152F13
HSCHR15_5_CTG8
bA152F13
-
-
AC010724.6
finished
157200 RPCI-11.1 5' / 5'
1 / 34108
- / -
34105
0.01
Identified
2014-07-24
fetch_ncbi...
humpub
Certificate rejected
19 RP11-379H8
HSCHR15_5_CTG8
bA379H8
-
-
AC110291.7
finished
117481 RPCI-11.2        
  GAP (type-3) length unknown                  
21 RP11-439M15
HSCHR15_3_CTG3
bA439M15
-
-
AC136687.6
finished
180708 RPCI-11.2 5' / 3'
1 / 79445
- / -
93726
7.03
Identified
2014-07-24
fetch_ncbi...
humpub
Certificate submitted, not yet approved
22 RP11-291O21
HSCHR15_3_CTG3
bA291O21
-
-
AC025138.14
finished
173173 RPCI-11.2 5' / 3'
1 / 76292
- / -
104332
0.59
Identified
2014-07-24
fetch_ncbi...
humpub
Certificate submitted, not yet approved
23 RP11-228M15
HSCHR15_3_CTG3
bA228M15
-
-
AC091565.10
finished
180741 RPCI-11.1        
  GAP (type-3) length unknown                  
25 RP11-32B5
HSCHR15_1_CTG1
bA32B5
-
-
AC068446.22
finished
158465 RPCI-11.1 5' / 3'
127715 / 177255
- / -
127493
0.79
Identified
2014-07-24
fetch_ncbi...
humpub
Certificate submitted, not yet approved
26 RP11-116P24
HSCHR15_1_CTG1
bA116P24
-
-
AC136352.10
finished
177255 RPCI-11.1 5' / 3'
1 / 127314
- / -
25763
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
27 RP11-11H9
HSCHR15_1_CTG1
bA11H9
-
-
AC020679.7
finished
153077 RPCI-11.1 5' / 3'
1 / 143679
- / -
57586
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
28 RP11-983G14
HSCHR15_1_CTG1
bA983G14
-
-
AC171558.2
finished
201265 RPCI-11.4        

Statistics

Clone Summary

Number of gaps
6
Gap types
type-3
6
Total clones
22
Clone HTGS Phases
finished
22
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
845,568
Total finished length of fin clones w/ overlap
3,407,894
Total finished length of fin clones w/o overlap
2,562,326
Total overlap length of fin+unfin clones
845,568
Total finished length of fin+unfin clones w/ overlap
3,407,894
Total finished length of fin+unfin clones w/o overlap
2,562,326

Dovetails

# rank accession status length date
1 7 AC087382.11 unfinished 24,064 Wed, 23 Jul 2014 23:21
2 7 AC087382.11 unfinished 123,291 Wed, 23 Jul 2014 23:21

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Other links

* quick link - http://q.sanger.ac.uk/169pbtil