ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__15 (TPF updated: 2017-09-23)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP11-348J6
HSCHR15_2_CTG8
bA348J6
AC011847.9
finished
2 ABC9-44044400N8
HSCHR15_2_CTG8
f9A44044400N8
AC209298.3
finished
3 RP11-653J6
HSCHR15_2_CTG8
CONTAINER
bA653J6
AC087382.11
finished
4
HSCHR15_2_CTG8
CONTAINED
KF456072
KF456072.1
finished
3 RP11-653J6
HSCHR15_2_CTG8
CONTAINER
bA653J6
AC087382.11
finished
  GAP (type-3) length unknown    
6 RP11-1081C20
HSCHR15_1_CTG3
bA1081C20
AC135069.17
finished
7 RP11-467N20
HSCHR15_1_CTG3
bA467N20
AC116165.8
finished
  GAP (type-3) length unknown    
9 RP11-292P13
HSCHR15_3_CTG8
bA292P13
AC018901.8
finished
10 CTD-2163N2
HSCHR15_3_CTG8
bK2163N2
AC120778.2
finished
  GAP (type-3) length unknown    
12 RP13-98N21
HSCHR15_5_CTG8
bB98N21
AC126339.6
finished
13 RP11-96J23
HSCHR15_5_CTG8
bA96J23
AC011295.3
finished
14 RP11-152F13
HSCHR15_5_CTG8
bA152F13
AC010724.6
finished
15 RP11-379H8
HSCHR15_5_CTG8
bA379H8
AC110291.7
finished
  GAP (type-3) length unknown    
17 RP11-439M15
HSCHR15_3_CTG3
bA439M15
AC136687.6
finished
18 RP11-291O21
HSCHR15_3_CTG3
bA291O21
AC025138.14
finished
19 RP11-228M15
HSCHR15_3_CTG3
bA228M15
AC091565.10
finished
  GAP (type-3) length unknown    
21 RP11-32B5
HSCHR15_1_CTG1
bA32B5
AC068446.22
finished
22 RP11-116P24
HSCHR15_1_CTG1
bA116P24
AC136352.10
finished
23 RP11-11H9
HSCHR15_1_CTG1
bA11H9
AC020679.7
finished
24 RP11-983G14
HSCHR15_1_CTG1
bA983G14
AC171558.2
finished
  GAP (type-3) length unknown    
26 CTD-2022H16
HSCHR15_6_CTG8
bK2022H16
AC111152.2
finished
27 288P15
HSCHR15_6_CTG8
288P15
AC254979.1
contiguous
28 459P16
HSCHR15_6_CTG8
459P16
AC254962.1
finished
29 43L12
HSCHR15_6_CTG8
43L12
AC254958.1
finished
30 89G14
HSCHR15_6_CTG8
89G14
AC254952.1
finished
31 364D19
HSCHR15_6_CTG8
364D19
AC254957.1
finished
  GAP (type-2) length 1339926 bps    
33 362L5
HSCHR15_6_CTG8
362L5
AC254944.1
contiguous
34 439M17
HSCHR15_6_CTG8
439M17
AC254960.1
finished
35 89D21
HSCHR15_6_CTG8
89D21
AC254945.1
finished
36 RP11-758N13
HSCHR15_6_CTG8
bA758N13
AC090877.4
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 175360 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC011847.9 3503 178862 -
175361 217898 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC209298.3 1 42538 +
217899 267401 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC087382.11 123666 173168 -
267402 267775 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 KF456072.1 1 374 +
267776 391066 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC087382.11 1 123291 -
391067 441066 6 N 50000 contig no
441067 663792 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AC135069.17 1 222726 +
663793 768448 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AC116165.8 1 104656 -
768449 818448 9 N 50000 contig no
818449 1017951 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AC018901.8 1 199503 +
1017952 1063365 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AC120778.2 67869 113282 +
1063366 1113365 12 N 50000 contig no
1113366 1208852 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 AC126339.6 1 95487 +
1208853 1323839 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 AC011295.3 1 114987 -
1323840 1460871 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 AC010724.6 1 137032 -
1460872 1544245 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 16 AC110291.7 34108 117481 +
1544246 1594245 17 N 50000 contig no
1594246 1774953 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 AC136687.6 1 180708 -
1774954 1854398 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 AC025138.14 1 79445 -
1854399 1930690 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 AC091565.10 1 76292 -
1930691 1980690 21 N 50000 contig no
1980691 2011441 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 25 AC068446.22 127715 158465 -
2011442 2188696 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 25 AC136352.10 1 177255 -
2188697 2316010 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 25 AC020679.7 1 127314 -
2316011 2459689 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 25 AC171558.2 1 143679 -
2459690 2509689 26 N 50000 contig no
2509690 2533791 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 AC111152.2 1 24102 +
2533792 2638024 28 A AC254979.1 1 104233 +
2638025 2762882 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 32 AC254962.1 1 124858 -
2762883 2870348 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 32 AC254958.1 1 107466 -
2870349 2979737 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 32 AC254952.1 1 109389 -
2979738 3050359 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 32 AC254957.1 1 70622 -
3050360 4390285 33 N 1339926 contig yes # ALIGN GENUS
4390286 4453596 34 A AC254944.1 102435 165745 -
4453597 4583437 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 AC254960.1 76 129916 +
4583438 4744582 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 AC254945.1 9488 170632 +
4744583 4886639 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 AC090877.4 39404 181460 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
7
Gap types
type-2
1
type-3
6
Total clones
29
Clone HTGS Phases
contiguous
2
finished
27
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
951,623
Total finished length of fin clones w/ overlap
4,111,546
Total finished length of fin clones w/o overlap
3,159,923
Total overlap length of fin+unfin clones
1,177,638
Total finished length of fin+unfin clones w/ overlap
4,449,218
Total finished length of fin+unfin clones w/o overlap
3,271,580

Dovetails

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# rank accession status length date
1 3 AC087382 unfinished 24,064 Fri, 22 Sep 2017 23:16
2 3 AC087382 unfinished 123,291 Fri, 22 Sep 2017 23:16
3 34 AC254960 unfinished 75 Fri, 22 Sep 2017 23:16

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