ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__15 (TPF updated: 2015-07-01)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP11-483E23
HSCHR15_1_CTG8
bA483E23
AC091304.15
finished
2 RP11-147B8
HSCHR15_1_CTG8
bA147B8
AC138747.3
finished
3 RP11-536P16
HSCHR15_1_CTG8
bA536P16
AC138749.6
finished
  GAP (type-3) length unknown    
5 RP11-348J6
HSCHR15_2_CTG8
bA348J6
AC011847.9
finished
6 ABC9-44044400N8
HSCHR15_2_CTG8
f9A44044400N8
AC209298.3
finished
7 RP11-653J6
HSCHR15_2_CTG8
CONTAINER
bA653J6
AC087382.11
finished
8
HSCHR15_2_CTG8
CONTAINED
KF456072
KF456072.1
finished
7 RP11-653J6
HSCHR15_2_CTG8
CONTAINER
bA653J6
AC087382.11
finished
  GAP (type-3) length unknown    
10 RP11-1081C20
HSCHR15_1_CTG3
bA1081C20
AC135069.17
finished
11 RP11-467N20
HSCHR15_1_CTG3
bA467N20
AC116165.8
finished
  GAP (type-3) length unknown    
13 RP11-292P13
HSCHR15_3_CTG8
bA292P13
AC018901.8
finished
14 CTD-2163N2
HSCHR15_3_CTG8
bK2163N2
AC120778.2
finished
  GAP (type-3) length unknown    
16 RP13-98N21
HSCHR15_5_CTG8
bB98N21
AC126339.6
finished
17 RP11-96J23
HSCHR15_5_CTG8
bA96J23
AC011295.3
finished
18 RP11-152F13
HSCHR15_5_CTG8
bA152F13
AC010724.6
finished
19 RP11-379H8
HSCHR15_5_CTG8
bA379H8
AC110291.7
finished
  GAP (type-3) length unknown    
21 RP11-439M15
HSCHR15_3_CTG3
bA439M15
AC136687.6
finished
22 RP11-291O21
HSCHR15_3_CTG3
bA291O21
AC025138.14
finished
23 RP11-228M15
HSCHR15_3_CTG3
bA228M15
AC091565.10
finished
  GAP (type-3) length unknown    
25 RP11-32B5
HSCHR15_1_CTG1
bA32B5
AC068446.22
finished
26 RP11-116P24
HSCHR15_1_CTG1
bA116P24
AC136352.10
finished
27 RP11-11H9
HSCHR15_1_CTG1
bA11H9
AC020679.7
finished
28 RP11-983G14
HSCHR15_1_CTG1
bA983G14
AC171558.2
finished
  GAP (type-3) length unknown    
30 CTD-2022H16
HSCHR15_6_CTG8
bK2022H16
AC111152.2
finished
31 288P15
HSCHR15_6_CTG8
288P15
AC254979.1
contiguous
32 459P16
HSCHR15_6_CTG8
459P16
AC254962.1
finished
33 43L12
HSCHR15_6_CTG8
43L12
AC254958.1
finished
34 89G14
HSCHR15_6_CTG8
89G14
AC254952.1
finished
35 364D19
HSCHR15_6_CTG8
364D19
AC254957.1
finished
  GAP (type-2) length 1339926 bps    
37 362L5
HSCHR15_6_CTG8
362L5
AC254944.1
contiguous
38 439M17
HSCHR15_6_CTG8
439M17
AC254960.1
finished
39 89D21
HSCHR15_6_CTG8
89D21
AC254945.1
finished
40 RP11-758N13
HSCHR15_6_CTG8
bA758N13
AC090877.4
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 53862 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC091304.15 1 53862 +
53863 212278 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC138747.3 1 158416 +
212279 327780 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC138749.6 1 115502 -
327781 377780 4 N 50000 contig no
377781 553140 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AC011847.9 3503 178862 -
553141 595678 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AC209298.3 1 42538 +
595679 645181 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AC087382.11 123666 173168 -
645182 645555 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 KF456072.1 1 374 +
645556 768846 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AC087382.11 1 123291 -
768847 818846 10 N 50000 contig no
818847 1041572 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AC135069.17 1 222726 +
1041573 1146228 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AC116165.8 1 104656 -
1146229 1196228 13 N 50000 contig no
1196229 1395731 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 AC018901.8 1 199503 +
1395732 1441145 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 AC120778.2 67869 113282 +
1441146 1491145 16 N 50000 contig no
1491146 1586632 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AC126339.6 1 95487 +
1586633 1701619 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AC011295.3 1 114987 -
1701620 1838651 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AC010724.6 1 137032 -
1838652 1922025 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AC110291.7 34108 117481 +
1922026 1972025 21 N 50000 contig no
1972026 2152733 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AC136687.6 1 180708 -
2152734 2232178 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AC025138.14 1 79445 -
2232179 2308470 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AC091565.10 1 76292 -
2308471 2358470 25 N 50000 contig no
2358471 2389221 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 29 AC068446.22 127715 158465 -
2389222 2566476 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 29 AC136352.10 1 177255 -
2566477 2693790 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 29 AC020679.7 1 127314 -
2693791 2837469 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 29 AC171558.2 1 143679 -
2837470 2887469 30 N 50000 contig no
2887470 2911571 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 AC111152.2 1 24102 +
2911572 3015804 32 A AC254979.1 1 104233 +
3015805 3140662 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 AC254962.1 1 124858 -
3140663 3248128 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 AC254958.1 1 107466 -
3248129 3357517 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 AC254952.1 1 109389 -
3357518 3428139 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 AC254957.1 1 70622 -
3428140 4768065 37 N 1339926 contig yes # ALIGN GENUS
4768066 4831376 38 A AC254944.1 102435 165745 -
4831377 4961217 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC254960.1 76 129916 +
4961218 5122362 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC254945.1 9488 170632 +
5122363 5264419 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC090877.4 39404 181460 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
8
Gap types
type-2
1
type-3
7
Total clones
32
Clone HTGS Phases
contiguous
2
finished
30
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,122,658
Total finished length of fin clones w/ overlap
4,610,556
Total finished length of fin clones w/o overlap
3,487,898
Total overlap length of fin+unfin clones
1,348,878
Total finished length of fin+unfin clones w/ overlap
4,948,228
Total finished length of fin+unfin clones w/o overlap
3,599,350

Dovetails

# rank accession status length date
1 7 AC087382.11 unfinished 24,064 Tue, 30 Jun 2015 23:18
2 7 AC087382.11 unfinished 123,291 Tue, 30 Jun 2015 23:18

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Other links

* quick link - http://q.sanger.ac.uk/169pbtil