ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__2 (TPF updated: 2014-11-25)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-490M8
HSCHR2_1_CTG5
CONTAINER
bA490M8
AC009414.4
finished
2 ABC12-47019900D6
HSCHR2_1_CTG5
CONTAINED
f12A47019900D6
AC209560.2
finished
1 RP11-490M8
HSCHR2_1_CTG5
CONTAINER
bA490M8
AC009414.4
finished
  GAP (type-3) length unknown    
4 RP11-750D14
HSCHR2_1_CTG7_2
CONTAINER
bA750D14
AC069137.6
finished
5 ABC9-45484000L12
HSCHR2_1_CTG7_2
CONTAINED
f9A45484000L12
AC208170.4
finished
4 RP11-750D14
HSCHR2_1_CTG7_2
CONTAINER
bA750D14
AC069137.6
finished
  GAP (type-3) length unknown    
7 89066G9
HSCHR2_2_CTG7_2
89066G9
AC144611.2
finished
8 ABC10-48936800O12
HSCHR2_2_CTG7_2
f10A48936800O12
AC206420.3
finished
9 RP13-549D10
HSCHR2_2_CTG7_2
bB549D10
AC108512.4
finished
  GAP (type-3) length unknown    
11 RP11-341N2
HSCHR2_1_CTG15
CONTAINER
bA341N2
AC093642.5
finished
12 ABC27-2308M17
HSCHR2_1_CTG15
CONTAINED
f27A2308M17
AC237191.3
finished
11 RP11-341N2
HSCHR2_1_CTG15
CONTAINER
bA341N2
AC093642.5
finished
  GAP (type-3) length unknown    
14 RP11-1L5
HSCHR2_3_CTG7_2
bA1L5
AC093724.3
finished
15 ABC14-864958H18
HSCHR2_3_CTG7_2
f14A864958H18
AC226740.3
finished
  GAP (type-3) length unknown    
17 RP11-1293J14
HSCHR2_1_CTG1
CONTAINER
bA1293J14
AC114810.4
finished
18 ABC13-48725900K15
HSCHR2_1_CTG1
CONTAINED
f13A48725900K15
AC216281.3
finished
17 RP11-1293J14
HSCHR2_1_CTG1
CONTAINER
bA1293J14
AC114810.4
finished
  GAP (type-3) length unknown    
20 RP13-539J13
HSCHR2_2_CTG1
CONTAINER
bB539J13
AC116609.6
finished
21 ABC12-49062000I17
HSCHR2_2_CTG1
CONTAINED
f12A49062000I17
AC208876.3
finished
20 RP13-539J13
HSCHR2_2_CTG1
CONTAINER
bB539J13
AC116609.6
finished
  GAP (type-3) length unknown    
23 RP11-321K13
HSCHR2_4_CTG7_2
CONTAINER
bA321K13
AC012449.7
finished
24 ABC8-2126940O17
HSCHR2_4_CTG7_2
CONTAINED
f8A2126940O17
AC231980.2
finished
23 RP11-321K13
HSCHR2_4_CTG7_2
CONTAINER
bA321K13
AC012449.7
finished
  GAP (type-3) length unknown    
26 CH17-132F21
HSCHR2_1_CTG7
CONTAINER
bMO132F21
AC233263.2
finished
27 ABC13-47492900H13
HSCHR2_1_CTG7
CONTAINED
f13A47492900H13
AC241851.2
finished
26 CH17-132F21
HSCHR2_1_CTG7
CONTAINER
bMO132F21
AC233263.2
finished
  GAP (type-3) length unknown    
29 ABC9-44031600H4
HSCHR2_3_CTG1
f9A44031600H4
AC206596.3
finished
30 CH16-67O12
HSCHR2_3_CTG1
ch16E67O12
AC225604.3
finished
  GAP (type-3) length unknown    
32 RP13-981I10
HSCHR2_4_CTG1
bB981I10
AC108489.5
finished
33 RP11-112B11
HSCHR2_4_CTG1
bA112B11
AC105450.1
finished
  GAP (type-3) length unknown    
35 RP11-339P1
HSCHR2_5_CTG7_2
CONTAINER
bA339P1
AC092633.2
finished
36 ABC9-43965000I4
HSCHR2_5_CTG7_2
CONTAINED
f9A43965000I4
AC213472.4
finished
35 RP11-339P1
HSCHR2_5_CTG7_2
CONTAINER
bA339P1
AC092633.2
finished
  GAP (type-3) length unknown    
38 RP11-789L24
HSCHR2_3_CTG15
CONTAINER
bA789L24
AC131097.6
finished
39
HSCHR2_3_CTG15
CONTAINED
KF510804
KF510804.1
finished
38 RP11-789L24
HSCHR2_3_CTG15
CONTAINER
bA789L24
AC131097.6
finished
40 ABC11-48195300B19
HSCHR2_3_CTG15
CONTAINED
f11A48195300B19
AC229662.3
finished
38 RP11-789L24
HSCHR2_3_CTG15
CONTAINER
bA789L24
AC131097.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 14633 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC009414.4 1 14633 +
14634 55675 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC209560.2 1 41042 +
55676 143590 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC009414.4 49643 137557 +
143591 193590 4 N 50000 contig no
193591 213476 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC069137.6 1 19886 +
213477 253791 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC208170.4 1 40315 +
253792 319415 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC069137.6 43213 108836 +
319416 369415 8 N 50000 contig no
369416 372630 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC144611.2 1 3215 +
372631 412061 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC206420.3 1 39431 +
412062 467546 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AC108512.4 1 55485 -
467547 517546 12 N 50000 contig no
517547 556170 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AC093642.5 1 38624 +
556171 594128 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AC237191.3 1 37958 -
594129 681124 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 15 AC093642.5 71208 158203 +
681125 731124 16 N 50000 contig no
731125 796912 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 18 AC093724.3 1 65788 +
796913 841223 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 18 AC226740.3 1 44311 -
841224 891223 19 N 50000 contig no
891224 915136 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 AC114810.4 1 23913 +
915137 949106 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 AC216281.3 1 33970 +
949107 1011839 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 AC114810.4 56517 119249 +
1011840 1061839 23 N 50000 contig no
1061840 1067695 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 26 AC116609.6 1 5856 +
1067696 1105723 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 26 AC208876.3 1 38028 +
1105724 1198079 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 26 AC116609.6 39068 131423 +
1198080 1248079 27 N 50000 contig no
1248080 1299389 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 AC012449.7 1 51310 +
1299390 1327744 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 AC231980.2 1 28355 +
1327745 1360474 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 AC012449.7 76606 109335 +
1360475 1410474 31 N 50000 contig no
1410475 1437136 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 AC233263.2 1 26662 +
1437137 1477120 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 AC241851.2 1 39984 +
1477121 1584063 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 AC233263.2 66636 173578 +
1584064 1634063 35 N 50000 contig no
1634064 1662100 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 AC206596.3 1 28037 +
1662101 1704950 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 AC225604.3 1 42850 -
1704951 1754950 38 N 50000 contig no
1754951 1922413 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 40 AC108489.5 1 167463 +
1922414 1980575 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 40 AC105450.1 1 58162 -
1980576 2030575 41 N 50000 contig no
2030576 2045473 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 AC092633.2 1 14898 +
2045474 2080634 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 AC213472.4 1 35161 +
2080635 2172594 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 AC092633.2 43904 135863 +
2172595 2222594 45 N 50000 contig no
2222595 2308678 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 AC131097.6 1 86084 +
2308679 2309007 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 KF510804.1 1 329 +
2309008 2348849 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 AC131097.6 86413 126254 +
2348850 2390430 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 AC229662.3 1 41581 -
2390431 2410388 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 50 AC131097.6 167073 187030 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-490M8
HSCHR2_1_CTG5
CONTAINER
bA490M8
-
-
AC009414.4
finished
137557 RPCI-11.2 3' / 5'
14633 / 1
87915 / -
41042
17.8
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
2 ABC12-47019900D6
HSCHR2_1_CTG5
CONTAINED
f12A47019900D6
-
-
AC209560.2
finished
41042 ABC12 3' / 5'
41042 / 49643
- / 14633
41042
17.8
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
1 RP11-490M8
HSCHR2_1_CTG5
CONTAINER
bA490M8
-
-
AC009414.4
finished
137557 RPCI-11.2        
  GAP (type-3) length unknown                  
4 RP11-750D14
HSCHR2_1_CTG7_2
CONTAINER
bA750D14
-
-
AC069137.6
finished
108836 RPCI-11.3 3' / 5'
19886 / 1
65624 / -
40315
73.16
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
5 ABC9-45484000L12
HSCHR2_1_CTG7_2
CONTAINED
f9A45484000L12
-
-
AC208170.4
finished
40315 ABC9 3' / 5'
40315 / 43213
- / 19886
40315
73.16
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
4 RP11-750D14
HSCHR2_1_CTG7_2
CONTAINER
bA750D14
-
-
AC069137.6
finished
108836 RPCI-11.3        
  GAP (type-3) length unknown                  
7 89066G9
HSCHR2_2_CTG7_2
89066G9
-
-
AC144611.2
finished
12965 - 3' / 5'
3215 / 1
- / -
9749
0.02
Identified
2014-11-12
fetch_ncbi...
humpub
 
8 ABC10-48936800O12
HSCHR2_2_CTG7_2
f10A48936800O12
-
-
AC206420.3
finished
39431 ABC10 3' / 3'
39431 / 55485
- / -
20680
29.5
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
9 RP13-549D10
HSCHR2_2_CTG7_2
bB549D10
-
-
AC108512.4
finished
76170 RPCI-13.3        
  GAP (type-3) length unknown                  
11 RP11-341N2
HSCHR2_1_CTG15
CONTAINER
bA341N2
-
-
AC093642.5
finished
158203 RPCI-11.2 3' / 3'
38624 / 37958
86996 / -
37958
17.71
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
12 ABC27-2308M17
HSCHR2_1_CTG15
CONTAINED
f27A2308M17
-
-
AC237191.3
finished
37958 ABC27 5' / 5'
1 / 71208
- / 38624
37958
17.71
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
11 RP11-341N2
HSCHR2_1_CTG15
CONTAINER
bA341N2
-
-
AC093642.5
finished
158203 RPCI-11.2        
  GAP (type-3) length unknown                  
14 RP11-1L5
HSCHR2_3_CTG7_2
bA1L5
-
-
AC093724.3
finished
161617 RPCI-11.1 3' / 3'
65788 / 44311
52647 / -
43054
3.87
Identified
2014-11-11
agp2oracle
humpub
Certificate approved
15 ABC14-864958H18
HSCHR2_3_CTG7_2
f14A864958H18
-
-
AC226740.3
finished
44311 ABC14        
  GAP (type-3) length unknown                  
17 RP11-1293J14
HSCHR2_1_CTG1
CONTAINER
bA1293J14
-
-
AC114810.4
finished
119249 RPCI-11.5 3' / 5'
23913 / 1
62733 / -
33970
10.28
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
18 ABC13-48725900K15
HSCHR2_1_CTG1
CONTAINED
f13A48725900K15
-
-
AC216281.3
finished
33970 ABC13 3' / 5'
33970 / 56517
- / 23913
33970
10.28
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
17 RP11-1293J14
HSCHR2_1_CTG1
CONTAINER
bA1293J14
-
-
AC114810.4
finished
119249 RPCI-11.5        
  GAP (type-3) length unknown                  
20 RP13-539J13
HSCHR2_2_CTG1
CONTAINER
bB539J13
-
-
AC116609.6
finished
131423 RPCI-13.3 3' / 5'
5856 / 1
92356 / -
38028
15.35
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
21 ABC12-49062000I17
HSCHR2_2_CTG1
CONTAINED
f12A49062000I17
-
-
AC208876.3
finished
38028 ABC12 3' / 5'
38028 / 39068
- / 5856
38028
15.35
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
20 RP13-539J13
HSCHR2_2_CTG1
CONTAINER
bB539J13
-
-
AC116609.6
finished
131423 RPCI-13.3        
  GAP (type-3) length unknown                  
23 RP11-321K13
HSCHR2_4_CTG7_2
CONTAINER
bA321K13
-
-
AC012449.7
finished
109335 RPCI-11.2 3' / 5'
51310 / 1
32730 / -
28355
16
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
24 ABC8-2126940O17
HSCHR2_4_CTG7_2
CONTAINED
f8A2126940O17
-
-
AC231980.2
finished
28355 ABC8 3' / 5'
28355 / 76606
- / 51310
28355
16
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
23 RP11-321K13
HSCHR2_4_CTG7_2
CONTAINER
bA321K13
-
-
AC012449.7
finished
109335 RPCI-11.2        
  GAP (type-3) length unknown                  
26 CH17-132F21
HSCHR2_1_CTG7
CONTAINER
bMO132F21
-
-
AC233263.2
finished
173578 CHORI-17 3' / 5'
26662 / 1
106943 / -
39984
5.87
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
27 ABC13-47492900H13
HSCHR2_1_CTG7
CONTAINED
f13A47492900H13
-
-
AC241851.2
finished
39984 ABC13 3' / 5'
39984 / 66636
- / 26662
39984
5.87
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
26 CH17-132F21
HSCHR2_1_CTG7
CONTAINER
bMO132F21
-
-
AC233263.2
finished
173578 CHORI-17        
  GAP (type-3) length unknown                  
29 ABC9-44031600H4
HSCHR2_3_CTG1
f9A44031600H4
-
-
AC206596.3
finished
28037 ABC9 3' / 3'
28037 / 42850
- / 1
23215
28.19
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
30 CH16-67O12
HSCHR2_3_CTG1
ch16E67O12
-
-
AC225604.3
finished
72250 CH16        
  GAP (type-3) length unknown                  
32 RP13-981I10
HSCHR2_4_CTG1
bB981I10
-
-
AC108489.5
finished
167463 RPCI-13.4 3' / 3'
167463 / 58162
- / -
104263
2.02
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
33 RP11-112B11
HSCHR2_4_CTG1
bA112B11
-
-
AC105450.1
finished
163782 RPCI-11.1        
  GAP (type-3) length unknown                  
35 RP11-339P1
HSCHR2_5_CTG7_2
CONTAINER
bA339P1
-
-
AC092633.2
finished
135863 RPCI-11.2 3' / 5'
14898 / 1
91960 / -
35161
21.33
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
36 ABC9-43965000I4
HSCHR2_5_CTG7_2
CONTAINED
f9A43965000I4
-
-
AC213472.4
finished
35161 ABC9 3' / 5'
35161 / 43904
- / 14898
35161
21.33
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
35 RP11-339P1
HSCHR2_5_CTG7_2
CONTAINER
bA339P1
-
-
AC092633.2
finished
135863 RPCI-11.2        
  GAP (type-3) length unknown                  
38 RP11-789L24
HSCHR2_3_CTG15
CONTAINER
bA789L24
-
-
AC131097.6
finished
187030 RPCI-11.3 3' / 5'
86084 / 1
100618 / -
329
0.3
Identified
2014-11-12
fetch_ncbi...
humpub
 
39
HSCHR2_3_CTG15
CONTAINED
KF510804
-
-
KF510804.1
finished
329 - 3' / 5'
329 / 86413
- / 86084
329
0.3
Identified
2014-11-12
fetch_ncbi...
humpub
 
38 RP11-789L24
HSCHR2_3_CTG15
CONTAINER
bA789L24
-
-
AC131097.6
finished
187030 RPCI-11.3 3' / 3'
126254 / 41581
19958 / -
41581
3.04
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
40 ABC11-48195300B19
HSCHR2_3_CTG15
CONTAINED
f11A48195300B19
-
-
AC229662.3
finished
41581 ABC11 5' / 5'
1 / 167073
- / 126254
41581
3.04
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate submitted, not yet approved
38 RP11-789L24
HSCHR2_3_CTG15
CONTAINER
bA789L24
-
-
AC131097.6
finished
187030 RPCI-11.3        

Statistics

Clone Summary

Number of gaps
12
Gap types
type-3
12
Total clones
28
Clone HTGS Phases
finished
28
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
450,393
Total finished length of fin clones w/ overlap
2,363,823
Total finished length of fin clones w/o overlap
1,913,430
Total overlap length of fin+unfin clones
450,393
Total finished length of fin+unfin clones w/ overlap
2,363,823
Total finished length of fin+unfin clones w/o overlap
1,913,430

Dovetails

# rank accession status length date
1 1 AC009414.4 unfinished 87,915 Tue, 25 Nov 2014 23:26
2 4 AC069137.6 unfinished 65,624 Tue, 25 Nov 2014 23:26
3 11 AC093642.5 unfinished 86,996 Tue, 25 Nov 2014 23:26
4 14 AC093724.3 unfinished 65,788 Tue, 25 Nov 2014 23:26
5 17 AC114810.4 unfinished 62,733 Tue, 25 Nov 2014 23:26
6 20 AC116609.6 unfinished 92,356 Tue, 25 Nov 2014 23:26
7 23 AC012449.7 unfinished 32,730 Tue, 25 Nov 2014 23:26
8 26 AC233263.2 unfinished 106,943 Tue, 25 Nov 2014 23:26
9 30 AC225604.3 unfinished 1 Tue, 25 Nov 2014 23:26
10 35 AC092633.2 unfinished 91,960 Tue, 25 Nov 2014 23:26
11 38 AC131097.6 unfinished 100,618 Tue, 25 Nov 2014 23:26

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Other links

* quick link - http://q.sanger.ac.uk/169qfj5h