ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__20 (TPF updated: 2015-08-03)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP5-905G11
Hschr20_1_ctg1
CONTAINER
dJ905G11
AL035045.5
finished
2
Hschr20_1_ctg1
CONTAINED
KF511286
KF511286.1
finished
1 RP5-905G11
Hschr20_1_ctg1
CONTAINER
dJ905G11
AL035045.5
finished
3 ABC10-44678300B16
Hschr20_1_ctg1
CONTAINED
f10A44678300B16
AC207480.4
finished
1 RP5-905G11
Hschr20_1_ctg1
CONTAINER
dJ905G11
AL035045.5
finished
  GAP (type-3) length unknown    
5 RP5-1107C24
Hschr20_1_ctg2
CONTAINER
dJ1107C24
AL109911.47
finished
6
Hschr20_1_ctg2
CONTAINED
KF510476
KF510476.1
finished
5 RP5-1107C24
Hschr20_1_ctg2
CONTAINER
dJ1107C24
AL109911.47
finished
7 ABC11-49495800G16
Hschr20_1_ctg2
CONTAINED
f11A49495800G16
AC231535.2
finished
5 RP5-1107C24
Hschr20_1_ctg2
CONTAINER
dJ1107C24
AL109911.47
finished
8
Hschr20_1_ctg2
CONTAINED
KF456986
KF456986.1
finished
5 RP5-1107C24
Hschr20_1_ctg2
CONTAINER
dJ1107C24
AL109911.47
finished
  GAP (type-3) length unknown    
10 RP5-1022E24
Hschr20_1_ctg3
CONTAINER
dJ1022E24
AL121581.41
finished
11 ABC14-50932400F15
Hschr20_1_ctg3
CONTAINED
f14A50932400F15
AC226131.3
finished
10 RP5-1022E24
Hschr20_1_ctg3
CONTAINER
dJ1022E24
AL121581.41
finished
  GAP (type-3) length unknown    
13 RP11-358D14
Hschr20_1_ctg4
CONTAINER
bA358D14
AL353658.33
finished
14 ABC9-43877600K3
Hschr20_1_ctg4
CONTAINED
f9A43877600K3
AC210433.3
finished
13 RP11-358D14
Hschr20_1_ctg4
CONTAINER
bA358D14
AL353658.33
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 67780 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AL035045.5 1 67780 +
67781 68137 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 KF511286.1 1 357 -
68138 78844 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AL035045.5 68137 78843 +
78845 120231 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC207480.4 1 41387 +
120232 128486 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AL035045.5 114215 122469 +
128487 178486 6 N 50000 contig no
178487 210953 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 13 AL109911.47 1 32467 +
210954 211331 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 13 KF510476.1 1 378 +
211332 212119 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 13 AL109911.47 32848 33635 +
212120 254033 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 13 AC231535.2 12 41925 +
254034 271013 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 13 AL109911.47 78656 95635 +
271014 271150 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 13 KF456986.1 1 137 -
271151 297360 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 13 AL109911.47 95773 121982 +
297361 347360 14 N 50000 contig no
347361 376790 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AL121581.41 1 29430 +
376791 414444 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AC226131.3 1 37654 -
414445 530893 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 17 AL121581.41 63440 179888 +
530894 580893 18 N 50000 contig no
580894 597395 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AL353658.33 1 16502 +
597396 634174 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AC210433.3 1 36779 +
634175 639654 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 AL353658.33 50996 56475 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
11
Clone HTGS Phases
finished
11
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
67,527
Total finished length of fin clones w/ overlap
639,431
Total finished length of fin clones w/o overlap
571,904
Total overlap length of fin+unfin clones
67,527
Total finished length of fin+unfin clones w/ overlap
639,431
Total finished length of fin+unfin clones w/o overlap
571,904

Dovetails

# rank accession status length date
1 1 AL035045.5 unfinished 54,333 Sun, 02 Aug 2015 23:51
2 5 AL109911.47 unfinished 89,135 Sun, 02 Aug 2015 23:51
3 10 AL121581.41 unfinished 116,449 Sun, 02 Aug 2015 23:51
4 13 AL353658.33 unfinished 5,480 Sun, 02 Aug 2015 23:51

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Other links

* quick link - http://q.sanger.ac.uk/wuhmwbvn