ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__17 (TPF updated: 2014-11-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CTB-39G8
HSCHR17_1_CTG5
bK39G8
AC003070.2
finished
2 RP11-1022D1
HSCHR17_1_CTG5
bA1022D1
AC217778.1
finished
3 RP11-57A24
HSCHR17_1_CTG5
bA57A24
EPN details
AC134982.5
finished
4 RP11-300H14
HSCHR17_1_CTG5
bA300H14
AC138688.2
finished
5 RP11-162O14
HSCHR17_1_CTG5
bA162O14
AC127032.8
finished
6 RP11-123O20
HSCHR17_1_CTG5
bA123O20
AC217772.2
finished
7 RP11-111I23
HSCHR17_1_CTG5
bA111I23
AC217779.1
finished
8 RP11-769P22
HSCHR17_1_CTG5
bA769P22
EPN details
BX544879.6
finished
9 RP11-80L9
HSCHR17_1_CTG5
bA80L9
AC217770.1
finished
10 RP11-620A22
HSCHR17_1_CTG5
bA620A22
AC225613.2
finished
11 ABC14-139C6
HSCHR17_1_CTG5
f14A139C6
AC244161.3
finished
  GAP (type-2) length unknown    
13 ABC14-139C7
HSCHR17_1_CTG5
f14A139C7
AC244163.4
finished
14 RP11-1070B7
HSCHR17_1_CTG5
bA1070B7
AC139677.4
finished
15 RP11-619A10
HSCHR17_1_CTG5
bA619A10
AC217775.1
finished
16 RP11-84A7
HSCHR17_1_CTG5
bA84A7
AC243906.3
finished
17 RP11-220N20
HSCHR17_1_CTG5
bA220N20
AC019319.9
finished
  GAP (type-3) length unknown    
19 RP11-1228E12
HSCHR17_1_CTG1
bA1228E12
AC240565.4
finished
20 ABC11-48321900O7
HSCHR17_1_CTG1
f11A48321900O7
AC216025.3
finished
21 ABC9-43994100N24
HSCHR17_1_CTG1
f9A43994100N24
AC207589.3
finished
22 ABC10-44636600B17
HSCHR17_1_CTG1
f10A44636600B17
AC214012.3
finished
23 RP11-1260E13
HSCHR17_1_CTG1
CONTAINER
bA1260E13
AC129507.10
finished
24 ABC10-46312400C4
HSCHR17_1_CTG1
CONTAINED
f10A46312400C4
AC211856.4
finished
23 RP11-1260E13
HSCHR17_1_CTG1
CONTAINER
bA1260E13
AC129507.10
finished
25 ABC10-44486500I10
HSCHR17_1_CTG1
CONTAINED
f10A44486500I10
AC243301.3
finished
23 RP11-1260E13
HSCHR17_1_CTG1
CONTAINER
bA1260E13
AC129507.10
finished
  GAP (type-3) length unknown    
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
AC003958.3
finished
28
HSCHR17_1_CTG4
CONTAINED
KF456274
KF456274.1
finished
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
AC003958.3
finished
29 ABC10-44552700E13
HSCHR17_1_CTG4
CONTAINED
f10A44552700E13
AC207056.3
finished
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
AC003958.3
finished
30
HSCHR17_1_CTG4
CONTAINED
KF456272
KF456272.1
finished
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
AC003958.3
finished
  GAP (type-3) length unknown    
32 CTD-2378E21
HSCHR17_2_CTG4
bK2378E21
AC011990.7
finished
33 ABC9-43972200E24
HSCHR17_2_CTG4
f9A43972200E24
AC207965.2
finished
34 RP11-467K17
HSCHR17_2_CTG4
bA467K17
AC005939.1
finished
  GAP (type-3) length unknown    
36 ABC13-47477500G23
HSCHR17_3_CTG4
f13A47477500G23
AC216282.3
finished
37 RP11-285E9
HSCHR17_3_CTG4
bA285E9
AC068594.15
finished
  GAP (type-3) length unknown    
39 RP5-1110E20
HSCHR17_4_CTG4
dJ1110E20
AC004231.2
finished
40 RP11-619M15
HSCHR17_4_CTG4
bA619M15
AC037482.14
finished
  GAP (type-3) length unknown    
42 RP11-206C20
HSCHR17_5_CTG4
bA206C20
AC006070.1
finished
43 ABC9-43961700F1
HSCHR17_5_CTG4
f9A43961700F1
AC209539.6
finished
  GAP (type-3) length unknown    
45 RP11-362K1
HSCHR17_7_CTG4
bA362K1
AC015849.5
finished
46 CTB-186H2
HSCHR17_7_CTG4
bK186H2
AC004675.1
finished
47 RP11-104J23
HSCHR17_7_CTG4
bA104J23
AC069363.10
finished
48 CTB-91J4
HSCHR17_7_CTG4
bK91J4
AC003976.1
finished
49 CH17-235K9
HSCHR17_7_CTG4
bMO235K9
AC233699.3
finished
50 CH17-260O16
HSCHR17_7_CTG4
bMO260O16
AC233700.3
finished
51 CH17-16P3
HSCHR17_7_CTG4
bMO16P3
AC233698.3
finished
52 CTB-75G16
HSCHR17_7_CTG4
bK75G16
AC003042.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
54
HSCHR17_7_CTG4
CONTAINED
KC877639
KC877639.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
55
HSCHR17_7_CTG4
CONTAINED
KC877645
KC877645.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
56
HSCHR17_7_CTG4
CONTAINED
KC877642
KC877642.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
57
HSCHR17_7_CTG4
CONTAINED
KC877650
KC877650.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
58
HSCHR17_7_CTG4
CONTAINED
KC877652
KC877652.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
59 RP11-445F12
HSCHR17_7_CTG4
bA445F12
AC025882.7
finished
60 RP11-333J10
HSCHR17_7_CTG4
CONTAINER
bA333J10
AC023315.4
finished
61
HSCHR17_7_CTG4
CONTAINED
KF456270
KF456270.1
finished
60 RP11-333J10
HSCHR17_7_CTG4
CONTAINER
bA333J10
AC023315.4
finished
62 CTC-268N12
HSCHR17_7_CTG4
bK268N12
AC003103.2
finished
63 RP11-19G24
HSCHR17_7_CTG4
CONTAINER
bA19G24
AC016482.5
finished
64
HSCHR17_7_CTG4
CONTAINED
KF456271
KF456271.2
finished
63 RP11-19G24
HSCHR17_7_CTG4
CONTAINER
bA19G24
AC016482.5
finished
65 RP11-378E13
HSCHR17_7_CTG4
bA378E13
AC068400.10
finished
66 RP11-451O3
HSCHR17_7_CTG4
bA451O3
AC068447.16
finished
67 CTC-421K24
HSCHR17_7_CTG4
CONTAINER
bK421K24
AC004099.1
finished
68
HSCHR17_7_CTG4
CONTAINED
KC877651
KC877651.1
finished
67 CTC-421K24
HSCHR17_7_CTG4
CONTAINER
bK421K24
AC004099.1
finished
69
HSCHR17_7_CTG4
CONTAINED
KC877655
KC877655.1
finished
67 CTC-421K24
HSCHR17_7_CTG4
CONTAINER
bK421K24
AC004099.1
finished
70 RP11-697E22
HSCHR17_7_CTG4
bA697E22
AC091199.6
finished
71 RP11-115K3
HSCHR17_7_CTG4
bA115K3
AC113211.5
finished
72 RP11-1407O15
HSCHR17_7_CTG4
bA1407O15
AC183087.2
finished
73 RP11-1331M22
HSCHR17_7_CTG4
bA1331M22
AC183084.2
finished
74 RP11-923C2
HSCHR17_7_CTG4
bA923C2
AC124789.12
finished
75 CTC-861O14
HSCHR17_7_CTG4
CONTAINER
bK861O14
AC115090.8
finished
76
HSCHR17_7_CTG4
CONTAINED
KC877653
KC877653.1
finished
75 CTC-861O14
HSCHR17_7_CTG4
CONTAINER
bK861O14
AC115090.8
finished
77 RP11-2L19
HSCHR17_7_CTG4
bA2L19
AC129916.6
finished
78 CTB-58E17
HSCHR17_7_CTG4
CONTAINER
bK58E17
AC006449.19
finished
79
HSCHR17_7_CTG4
CONTAINED
KF456275
KF456275.1
finished
78 CTB-58E17
HSCHR17_7_CTG4
CONTAINER
bK58E17
AC006449.19
finished
  GAP (type-3) length unknown    
81 CTD-2319F6
HSCHR17_8_CTG4
bK2319F6
AC118653.6
finished
82 RP11-423M11
HSCHR17_8_CTG4
bA423M11
AC006448.14
finished
83 RP11-166M16
HSCHR17_8_CTG4
bA166M16
AC007432.9
finished
  GAP (type-3) length unknown    
85 RP11-171G2
HSCHR17_9_CTG4
bA171G2
AC011120.11
finished
86 DD0002K7INU_L24
HSCHR17_9_CTG4
DD0002K7INU_L24
AC240577.2
finished
87 CTC-386K3
HSCHR17_9_CTG4
bK386K3
AC138336.3
finished
  GAP (type-3) length unknown    
89 RP11-1197K16
HSCHR17_1_CTG9
CONTAINER
bA1197K16
AC130371.4
finished
90 RP13-629P20
HSCHR17_1_CTG9
CONTAINED
bB629P20
AC127518.8
finished
89 RP11-1197K16
HSCHR17_1_CTG9
CONTAINER
bA1197K16
AC130371.4
finished
  GAP (type-3) length unknown    
92 RP11-961A15
HSCHR17_1_CTG2
CONTAINER
bA961A15
AC130343.7
finished
93 ABC9-43899000N1
HSCHR17_1_CTG2
CONTAINED
f9A43899000N1
AC206360.2
finished
92 RP11-961A15
HSCHR17_1_CTG2
CONTAINER
bA961A15
AC130343.7
finished
  GAP (type-3) length unknown    
95 RP11-216P6
HSCHR17_2_CTG2
CONTAINER
bA216P6
AC015884.15
finished
96 ABC9-43324000O8
HSCHR17_2_CTG2
CONTAINED
f9A43324000O8
AC212841.2
finished
95 RP11-216P6
HSCHR17_2_CTG2
CONTAINER
bA216P6
AC015884.15
finished
97 CTD-2507J6
HSCHR17_2_CTG2
bK2507J6
AC107911.21
finished
98 RP11-818O24
HSCHR17_2_CTG2
bA818O24
AC032044.28
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 58647 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC003070.2 48571 107217 -
58648 234917 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC217778.1 1 176270 -
234918 239917 3 N 5000 No overlap in database    
239918 449749 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AC134982.5 1 209832 +
449750 454749 5 N 5000 No overlap in database    
454750 637842 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC138688.2 1 183093 -
637843 761665 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC127032.8 63863 187685 +
761666 835325 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC217772.2 89487 163146 +
835326 986092 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC217779.1 30096 180862 +
986093 1046837 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 BX544879.6 116408 177152 +
1046838 1197769 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC217770.1 1 150932 -
1197770 1368289 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC225613.2 1 170520 -
1368290 1388544 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC244161.3 1 20255 -
1388545 1438544 14 N 50000 contig yes
1438545 1478269 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC244163.4 1 39725 +
1478270 1652154 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC139677.4 1 173885 -
1652155 1754764 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC217775.1 74484 177093 +
1754765 1917522 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC243906.3 26726 189483 +
1917523 1935897 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC019319.9 23486 41860 +
1935898 1985897 20 N 50000 contig no
1985898 2112426 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC240565.4 1 126529 +
2112427 2148861 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC216025.3 3 36437 -
2148862 2185937 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC207589.3 1 37076 -
2185938 2230192 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC214012.3 1 44255 -
2230193 2252798 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC129507.10 105191 127796 -
2252799 2286010 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC211856.4 1 33212 +
2286011 2290722 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC129507.10 69248 73959 -
2290723 2327828 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC243301.3 1 37106 +
2327829 2361588 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC129507.10 1 33760 -
2361589 2411588 30 N 50000 contig no
2411589 2428176 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 AC003958.3 1 16588 +
2428177 2428462 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 KF456274.1 1 286 -
2428463 2441875 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 AC003958.3 16875 30287 +
2441876 2481960 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 AC207056.3 1 40085 -
2481961 2530848 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 AC003958.3 63048 111935 +
2530849 2531136 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 KF456272.1 1 288 -
2531137 2546745 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 AC003958.3 112224 127832 +
2546746 2596745 38 N 50000 contig no
2596746 2642100 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC011990.7 1 45355 +
2642101 2680006 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC207965.2 1 37906 +
2680007 2842450 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC005939.1 17042 179485 +
2842451 2892450 42 N 50000 contig no
2892451 2928914 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 44 AC216282.3 1 36464 +
2928915 2982669 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 44 AC068594.15 114747 168501 +
2982670 3032669 45 N 50000 contig no
3032670 3148534 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 47 AC004231.2 21157 137021 -
3148535 3334612 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 47 AC037482.14 1 186078 -
3334613 3384612 48 N 50000 contig no
3384613 3414526 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 AC006070.1 1 29914 +
3414527 3454957 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 AC209539.6 1 40431 -
3454958 3504957 51 N 50000 contig no
3504958 3709997 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015849.5 1 205040 -
3709998 3789680 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC004675.1 48819 128501 +
3789681 3906365 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC069363.10 1 116685 -
3906366 3971861 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC003976.1 58430 123925 +
3971862 4101441 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC233699.3 93262 222841 +
4101442 4151358 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC233700.3 11303 61219 +
4151359 4357263 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC233698.3 1 205905 -
4357264 4440661 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC003042.1 1 83398 -
4440662 4446362 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 13568 19268 +
4446363 4446912 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877639.1 1 550 -
4446913 4478156 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 19819 51062 +
4478157 4478720 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877645.1 1 564 +
4478721 4484430 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 51627 57336 +
4484431 4484973 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877642.1 1 543 -
4484974 4542923 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 57880 115829 +
4542924 4543457 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877650.1 1 534 -
4543458 4603341 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 116364 176247 +
4603342 4603884 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877652.1 1 543 +
4603885 4607487 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 176791 180393 +
4607488 4732696 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC025882.7 1 125209 -
4732697 4807958 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC023315.4 19620 94881 -
4807959 4808344 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KF456270.1 1 386 +
4808345 4827577 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC023315.4 1 19233 -
4827578 4906931 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC003103.2 22447 101800 +
4906932 4913477 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC016482.5 16795 23340 +
4913478 4913814 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KF456271.2 1 337 +
4913815 5036046 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC016482.5 23678 145909 +
5036047 5209599 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC068400.10 1 173553 -
5209600 5219391 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC068447.16 1 9792 -
5219392 5310033 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC004099.1 3155 93796 +
5310034 5310514 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877651.1 1 481 +
5310515 5323459 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC004099.1 94278 107222 +
5323460 5323949 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877655.1 1 490 +
5323950 5352459 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC004099.1 107713 136222 +
5352460 5512084 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC091199.6 1 159625 -
5512085 5683521 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC113211.5 10189 181625 +
5683522 5807898 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC183087.2 1 124377 -
5807899 5945547 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC183084.2 1 137649 -
5945548 6000729 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC124789.12 1 55182 -
6000730 6136898 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC115090.8 9641 145809 -
6136899 6137321 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877653.1 1 423 +
6137322 6146538 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC115090.8 1 9217 -
6146539 6192302 94 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC129916.6 1 45764 -
6192303 6297131 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC006449.19 45770 150598 +
6297132 6297323 96 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KF456275.1 1 192 +
6297324 6433291 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC006449.19 150791 286758 +
6433292 6483291 98 N 50000 contig no
6483292 6547866 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 101 AC118653.6 47694 112268 -
6547867 6675451 100 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 101 AC006448.14 1 127585 -
6675452 6749458 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 101 AC007432.9 84039 158045 +
6749459 6799458 102 N 50000 contig no
6799459 6947165 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 105 AC011120.11 1 147707 +
6947166 6981420 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 105 AC240577.2 1 34255 +
6981421 7050104 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 105 AC138336.3 25717 94400 +
7050105 7100104 106 N 50000 contig no
7100105 7108565 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 AC130371.4 1 8461 +
7108566 7274645 108 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 AC127518.8 1 166080 +
7274646 7293780 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 AC130371.4 176479 195613 +
7293781 7343780 110 N 50000 contig no
7343781 7510754 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 113 AC130343.7 1 166974 +
7510755 7541344 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 113 AC206360.2 1 30590 +
7541345 7559954 113 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 113 AC130343.7 198644 217253 +
7559955 7609954 114 N 50000 contig no
7609955 7703066 115 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 119 AC015884.15 1 93112 +
7703067 7741514 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 119 AC212841.2 1 38448 +
7741515 7778131 117 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 119 AC015884.15 127261 163877 +
7778132 7867014 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 119 AC107911.21 1 88883 +
7867015 8011560 119 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 119 AC032044.28 1 144546 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CTB-39G8
HSCHR17_1_CTG5
bK39G8
-
-
AC003070.2
finished
107217 CIT978SK-B 5' / 3'
48571 / 176270
- / -
48545
0.2
Identified
2014-11-01
fetch_ncbi...
humpub
 
2 RP11-1022D1
HSCHR17_1_CTG5
bA1022D1
-
-
AC217778.1
finished
176270 RPCI-11.4        
3 RP11-57A24
HSCHR17_1_CTG5
bA57A24
EPN details
Externally Finished
21-JAN-13
AC134982.5
finished
209832 RPCI-11.1        
4 RP11-300H14
HSCHR17_1_CTG5
bA300H14
-
-
AC138688.2
finished
183093 RPCI-11.2 5' / 5'
1 / 63863
- / -
63860
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
5 RP11-162O14
HSCHR17_1_CTG5
bA162O14
-
-
AC127032.8
finished
187685 RPCI-11.1 3' / 5'
187685 / 89487
- / -
89485
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
6 RP11-123O20
HSCHR17_1_CTG5
bA123O20
-
-
AC217772.2
finished
163146 RPCI-11.1 3' / 5'
163146 / 30096
- / -
30095
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
7 RP11-111I23
HSCHR17_1_CTG5
bA111I23
-
-
AC217779.1
finished
180862 RPCI-11.1 3' / 5'
180862 / 116408
- / -
116407
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
8 RP11-769P22
HSCHR17_1_CTG5
bA769P22
EPN details
Analysed
05-SEP-03
BX544879.6
finished
177152 RPCI-11.3 3' / 3'
177152 / 150932
- / -
29627
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
9 RP11-80L9
HSCHR17_1_CTG5
bA80L9
-
-
AC217770.1
finished
180559 RPCI-11.1 5' / 3'
1 / 170520
- / -
4235
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
10 RP11-620A22
HSCHR17_1_CTG5
bA620A22
-
-
AC225613.2
finished
174755 RPCI-11.3 5' / 3'
1 / 20255
- / -
19112
4.42
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate approved
11 ABC14-139C6
HSCHR17_1_CTG5
f14A139C6
-
-
AC244161.3
finished
39406 ABC14        
  GAP (type-2) length unknown                  
13 ABC14-139C7
HSCHR17_1_CTG5
f14A139C7
-
-
AC244163.4
finished
39725 ABC14 3' / 3'
39725 / 173885
- / -
5672
61.77
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate approved
14 RP11-1070B7
HSCHR17_1_CTG5
bA1070B7
-
-
AC139677.4
finished
179564 RPCI-11.4 5' / 5'
1 / 74484
- / -
74483
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
15 RP11-619A10
HSCHR17_1_CTG5
bA619A10
-
-
AC217775.1
finished
177093 RPCI-11.3 3' / 5'
177093 / 26726
- / -
26724
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
16 RP11-84A7
HSCHR17_1_CTG5
bA84A7
-
-
AC243906.3
finished
189483 RPCI-11.1 3' / 5'
189483 / 23486
- / -
23484
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
17 RP11-220N20
HSCHR17_1_CTG5
bA220N20
-
-
AC019319.9
finished
41860 RPCI-11.1        
  GAP (type-3) length unknown                  
19 RP11-1228E12
HSCHR17_1_CTG1
bA1228E12
-
-
AC240565.4
finished
136727 RPCI-11.5 3' / 3'
126529 / 36437
- / -
10165
6.72
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
20 ABC11-48321900O7
HSCHR17_1_CTG1
f11A48321900O7
-
-
AC216025.3
finished
36437 ABC11 5' / 3'
3 / 37076
2 / -
2727
0.29
Identified
2014-11-01
fetch_ncbi...
humpub
 
21 ABC9-43994100N24
HSCHR17_1_CTG1
f9A43994100N24
-
-
AC207589.3
finished
39803 ABC9 5' / 3'
1 / 44255
- / -
3961
0.35
Identified
2014-11-01
fetch_ncbi...
humpub
 
22 ABC10-44636600B17
HSCHR17_1_CTG1
f10A44636600B17
-
-
AC214012.3
finished
48216 ABC10 5' / 3'
1 / 127796
- / 3154
30800
57.15
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
23 RP11-1260E13
HSCHR17_1_CTG1
CONTAINER
bA1260E13
-
-
AC129507.10
finished
161756 RPCI-11.5 5' / 5'
105191 / 1
73959 / -
33212
9.79
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
24 ABC10-46312400C4
HSCHR17_1_CTG1
CONTAINED
f10A46312400C4
-
-
AC211856.4
finished
33212 ABC10 3' / 3'
33212 / 73959
- / 56566
33212
9.79
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
23 RP11-1260E13
HSCHR17_1_CTG1
CONTAINER
bA1260E13
-
-
AC129507.10
finished
161756 RPCI-11.5 5' / 5'
69248 / 1
33760 / -
37106
9.39
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
25 ABC10-44486500I10
HSCHR17_1_CTG1
CONTAINED
f10A44486500I10
-
-
AC243301.3
finished
37106 ABC10 3' / 3'
37106 / 33760
- / 92509
37106
9.39
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
23 RP11-1260E13
HSCHR17_1_CTG1
CONTAINER
bA1260E13
-
-
AC129507.10
finished
161756 RPCI-11.5        
  GAP (type-3) length unknown                  
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
-
-
AC003958.3
finished
127832 RPCI-1 3' / 3'
16588 / 286
110958 / -
286
0.35
Identified
2014-11-01
agp2oracle
humpub
 
28
HSCHR17_1_CTG4
CONTAINED
KF456274
-
-
KF456274.1
finished
286 - 5' / 5'
1 / 16875
- / 16588
286
0.35
Identified
2014-11-01
agp2oracle
humpub
 
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
-
-
AC003958.3
finished
127832 RPCI-1 3' / 3'
30287 / 40085
64785 / -
40085
22.49
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate approved
29 ABC10-44552700E13
HSCHR17_1_CTG4
CONTAINED
f10A44552700E13
-
-
AC207056.3
finished
40085 ABC10 5' / 5'
1 / 63048
- / 30287
40085
22.49
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate approved
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
-
-
AC003958.3
finished
127832 RPCI-1 3' / 3'
111935 / 288
15609 / -
288
0.35
Identified
2014-11-01
agp2oracle
humpub
 
30
HSCHR17_1_CTG4
CONTAINED
KF456272
-
-
KF456272.1
finished
288 - 5' / 5'
1 / 112224
- / 111935
288
0.35
Identified
2014-11-01
agp2oracle
humpub
 
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
-
-
AC003958.3
finished
127832 RPCI-1        
  GAP (type-3) length unknown                  
32 CTD-2378E21
HSCHR17_2_CTG4
bK2378E21
-
-
AC011990.7
finished
76700 CIT-HSP-D1 3' / 5'
45355 / 1
- / -
31345
0.01
Identified
2014-11-01
fetch_ncbi...
humpub
 
33 ABC9-43972200E24
HSCHR17_2_CTG4
f9A43972200E24
-
-
AC207965.2
finished
37906 ABC9 3' / 5'
37906 / 17042
- / -
17040
35.8
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate approved
34 RP11-467K17
HSCHR17_2_CTG4
bA467K17
-
-
AC005939.1
finished
179485 RPCI-11.2        
  GAP (type-3) length unknown                  
36 ABC13-47477500G23
HSCHR17_3_CTG4
f13A47477500G23
-
-
AC216282.3
finished
36464 ABC13 3' / 5'
36464 / 114747
- / 89904
24829
0.29
Identified
2014-11-01
fetch_ncbi...
humpub
 
37 RP11-285E9
HSCHR17_3_CTG4
bA285E9
-
-
AC068594.15
finished
168501 RPCI-11.1        
  GAP (type-3) length unknown                  
39 RP5-1110E20
HSCHR17_4_CTG4
dJ1110E20
-
-
AC004231.2
finished
137021 RPCI-5 5' / 3'
21157 / 186078
- / -
21156
0.6
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate approved
40 RP11-619M15
HSCHR17_4_CTG4
bA619M15
-
-
AC037482.14
finished
186078 RPCI-11.3        
  GAP (type-3) length unknown                  
42 RP11-206C20
HSCHR17_5_CTG4
bA206C20
-
-
AC006070.1
finished
161987 RPCI-11.1 3' / 3'
29914 / 40431
81320 / -
40362
26.35
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate approved
43 ABC9-43961700F1
HSCHR17_5_CTG4
f9A43961700F1
-
-
AC209539.6
finished
40431 ABC9        
  GAP (type-3) length unknown                  
45 RP11-362K1
HSCHR17_7_CTG4
bA362K1
-
-
AC015849.5
finished
205040 RPCI-11.2 5' / 5'
1 / 48819
- / -
48818
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
46 CTB-186H2
HSCHR17_7_CTG4
bK186H2
-
-
AC004675.1
finished
128501 CIT978SK-B 3' / 3'
128501 / 116685
- / -
38089
0.48
Identified
2014-11-01
fetch_ncbi...
humpub
 
47 RP11-104J23
HSCHR17_7_CTG4
bA104J23
-
-
AC069363.10
finished
154828 RPCI-11.1 5' / 5'
1 / 58430
- / -
58388
0.62
Identified
2014-11-01
fetch_ncbi...
humpub
 
48 CTB-91J4
HSCHR17_7_CTG4
bK91J4
-
-
AC003976.1
finished
123925 CIT978SK-B 3' / 5'
123925 / 93262
- / -
93108
0.5
Identified
2014-11-01
fetch_ncbi...
humpub
 
49 CH17-235K9
HSCHR17_7_CTG4
bMO235K9
-
-
AC233699.3
finished
222841 CHORI-17 3' / 5'
222841 / 11303
- / -
11302
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
50 CH17-260O16
HSCHR17_7_CTG4
bMO260O16
-
-
AC233700.3
finished
245364 CHORI-17 3' / 3'
61219 / 205905
- / -
184143
0.01
Identified
2014-11-01
fetch_ncbi...
humpub
 
51 CH17-16P3
HSCHR17_7_CTG4
bMO16P3
-
-
AC233698.3
finished
205905 CHORI-17 5' / 3'
1 / 83398
- / -
19412
0.05
Identified
2014-11-01
fetch_ncbi...
humpub
 
52 CTB-75G16
HSCHR17_7_CTG4
bK75G16
-
-
AC003042.1
finished
102818 CIT978SK-B 5' / 5'
1 / 13568
- / -
13565
0.14
Identified
2014-11-01
fetch_ncbi...
humpub
 
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
-
-
AC015938.17
finished
180393 CIT-HSP-D2 3' / 3'
19268 / 550
160575 / -
550
0.18
Identified
2014-11-01
fetch_ncbi...
humpub
 
54
HSCHR17_7_CTG4
CONTAINED
KC877639
-
-
KC877639.1
finished
550 - 5' / 5'
1 / 19819
- / 19268
550
0.18
Identified
2014-11-01
fetch_ncbi...
humpub
 
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
-
-
AC015938.17
finished
180393 CIT-HSP-D2 3' / 5'
51062 / 1
128767 / -
564
0.18
Identified
2014-11-01
fetch_ncbi...
humpub
 
55
HSCHR17_7_CTG4
CONTAINED
KC877645
-
-
KC877645.1
finished
564 - 3' / 5'
564 / 51627
- / 51062
564
0.18
Identified
2014-11-01
fetch_ncbi...
humpub
 
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
-
-
AC015938.17
finished
180393 CIT-HSP-D2 3' / 3'
57336 / 543
122514 / -
543
0.18
Identified
2014-11-01
fetch_ncbi...
humpub
 
56
HSCHR17_7_CTG4
CONTAINED
KC877642
-
-
KC877642.1
finished
543 - 5' / 5'
1 / 57880
- / 57336
543
0.18
Identified
2014-11-01
fetch_ncbi...
humpub
 
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
-
-
AC015938.17
finished
180393 CIT-HSP-D2 3' / 3'
115829 / 534
64030 / -
534
0.19
Identified
2014-11-01
fetch_ncbi...
humpub
 
57
HSCHR17_7_CTG4
CONTAINED
KC877650
-
-
KC877650.1
finished
534 - 5' / 5'
1 / 116364
- / 115829
534
0.19
Identified
2014-11-01
fetch_ncbi...
humpub
 
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
-
-
AC015938.17
finished
180393 CIT-HSP-D2 3' / 5'
176247 / 1
3603 / -
543
0.18
Identified
2014-11-01
fetch_ncbi...
humpub
 
58
HSCHR17_7_CTG4
CONTAINED
KC877652
-
-
KC877652.1
finished
543 - 3' / 5'
543 / 176791
- / 176247
543
0.18
Identified
2014-11-01
fetch_ncbi...
humpub
 
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
-
-
AC015938.17
finished
180393 CIT-HSP-D2 3' / 3'
180393 / 125209
- / -
56742
0.45
Identified
2014-11-01
fetch_ncbi...
humpub
 
59 RP11-445F12
HSCHR17_7_CTG4
bA445F12
-
-
AC025882.7
finished
181991 RPCI-11.2 5' / 3'
1 / 94881
- / -
40811
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
60 RP11-333J10
HSCHR17_7_CTG4
CONTAINER
bA333J10
-
-
AC023315.4
finished
135692 RPCI-11.2 5' / 5'
19620 / 1
19233 / -
386
0.26
Identified
2014-11-01
fetch_ncbi...
humpub
 
61
HSCHR17_7_CTG4
CONTAINED
KF456270
-
-
KF456270.1
finished
386 - 3' / 3'
386 / 19233
- / 116073
386
0.26
Identified
2014-11-01
fetch_ncbi...
humpub
 
60 RP11-333J10
HSCHR17_7_CTG4
CONTAINER
bA333J10
-
-
AC023315.4
finished
135692 RPCI-11.2 5' / 5'
1 / 22447
- / -
22416
0.14
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate rejected
62 CTC-268N12
HSCHR17_7_CTG4
bK268N12
-
-
AC003103.2
finished
101800 CIT-HSP-C 3' / 5'
101800 / 16795
- / -
16792
0.06
Identified
2014-11-01
fetch_ncbi...
humpub
 
63 RP11-19G24
HSCHR17_7_CTG4
CONTAINER
bA19G24
-
-
AC016482.5
finished
145909 RPCI-11.1 3' / 5'
23340 / 1
122232 / -
337
0.3
Identified
2014-11-01
agp2oracle
humpub
 
64
HSCHR17_7_CTG4
CONTAINED
KF456271
-
-
KF456271.2
finished
337 - 3' / 5'
337 / 23678
- / 23340
337
0.3
Identified
2014-11-01
agp2oracle
humpub
 
63 RP11-19G24
HSCHR17_7_CTG4
CONTAINER
bA19G24
-
-
AC016482.5
finished
145909 RPCI-11.1 3' / 3'
145909 / 173553
- / -
32035
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
65 RP11-378E13
HSCHR17_7_CTG4
bA378E13
-
-
AC068400.10
finished
205588 RPCI-11.2 5' / 3'
1 / 9792
- / -
93176
0.22
Identified
2014-11-01
fetch_ncbi...
humpub
 
66 RP11-451O3
HSCHR17_7_CTG4
bA451O3
-
-
AC068447.16
finished
103056 RPCI-11.2 5' / 5'
1 / 3155
- / -
3147
1.17
Identified
2014-11-01
fetch_ncbi...
humpub
 
67 CTC-421K24
HSCHR17_7_CTG4
CONTAINER
bK421K24
-
-
AC004099.1
finished
136222 CIT-HSP-C 3' / 5'
93796 / 1
41945 / -
481
0.21
Identified
2014-11-01
fetch_ncbi...
humpub
 
68
HSCHR17_7_CTG4
CONTAINED
KC877651
-
-
KC877651.1
finished
481 - 3' / 5'
481 / 94278
- / 93796
481
0.21
Identified
2014-11-01
fetch_ncbi...
humpub
 
67 CTC-421K24
HSCHR17_7_CTG4
CONTAINER
bK421K24
-
-
AC004099.1
finished
136222 CIT-HSP-C 3' / 5'
107222 / 1
28510 / -
490
0.2
Identified
2014-11-01
fetch_ncbi...
humpub
 
69
HSCHR17_7_CTG4
CONTAINED
KC877655
-
-
KC877655.1
finished
490 - 3' / 5'
490 / 107713
- / 107222
490
0.2
Identified
2014-11-01
fetch_ncbi...
humpub
 
67 CTC-421K24
HSCHR17_7_CTG4
CONTAINER
bK421K24
-
-
AC004099.1
finished
136222 CIT-HSP-C 3' / 3'
136222 / 159625
- / -
29945
0.09
Identified
2014-11-01
fetch_ncbi...
humpub
 
70 RP11-697E22
HSCHR17_7_CTG4
bA697E22
-
-
AC091199.6
finished
189572 RPCI-11.3 5' / 5'
1 / 10189
- / -
10188
0.09
Identified
2014-11-01
fetch_ncbi...
humpub
 
71 RP11-115K3
HSCHR17_7_CTG4
bA115K3
-
-
AC113211.5
finished
181625 RPCI-11.1 3' / 3'
181625 / 124377
- / -
41583
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
72 RP11-1407O15
HSCHR17_7_CTG4
bA1407O15
-
-
AC183087.2
finished
165960 RPCI-11.5 5' / 3'
1 / 137649
- / -
64867
0
Identified
2014-11-01
fetch_ncbi...
humpub
 
73 RP11-1331M22
HSCHR17_7_CTG4
bA1331M22
-
-
AC183084.2
finished
202517 RPCI-11.5 5' / 3'
1 / 55182
- / -
50474
0.21
Identified
2014-11-01
fetch_ncbi...
humpub
 
74 RP11-923C2
HSCHR17_7_CTG4
bA923C2
-
-
AC124789.12
finished
105701 RPCI-11.4 5' / 3'
1 / 145809
- / -
27889
1.61
Identified
2014-11-01
fetch_ncbi...
humpub
 
75 CTC-861O14
HSCHR17_7_CTG4
CONTAINER
bK861O14
-
-
AC115090.8
finished
173716 CIT-HSP-C 5' / 5'
9641 / 1
9217 / -
423
0.24
Identified
2014-11-01
fetch_ncbi...
humpub
 
76
HSCHR17_7_CTG4
CONTAINED
KC877653
-
-
KC877653.1
finished
423 - 3' / 3'
423 / 9217
- / 164076
423
0.24
Identified
2014-11-01
fetch_ncbi...
humpub
 
75 CTC-861O14
HSCHR17_7_CTG4
CONTAINER
bK861O14
-
-
AC115090.8
finished
173716 CIT-HSP-C 5' / 3'
1 / 45764
- / -
121447
0.09
Identified
2014-11-01
fetch_ncbi...
humpub
 
77 RP11-2L19
HSCHR17_7_CTG4
bA2L19
-
-
AC129916.6
finished
167265 RPCI-11.1 5' / 5'
1 / 45770
- / -
45764
0.03
Identified
2014-11-01
fetch_ncbi...
humpub
 
78 CTB-58E17
HSCHR17_7_CTG4
CONTAINER
bK58E17
-
-
AC006449.19
finished
286758 CIT978SK-B 3' / 5'
150598 / 1
135968 / -
192
0.52
Identified
2014-11-01
fetch_ncbi...
humpub
 
79
HSCHR17_7_CTG4
CONTAINED
KF456275
-
-
KF456275.1
finished
192 - 3' / 5'
192 / 150791
- / 150598
192
0.52
Identified
2014-11-01
fetch_ncbi...
humpub
 
78 CTB-58E17
HSCHR17_7_CTG4
CONTAINER
bK58E17
-
-
AC006449.19
finished
286758 CIT978SK-B        
  GAP (type-3) length unknown                  
81 CTD-2319F6
HSCHR17_8_CTG4
bK2319F6
-
-
AC118653.6
finished
112268 CIT-HSP-D1 5' / 3'
47694 / 127585
- / 2
47561
2.88
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
82 RP11-423M11
HSCHR17_8_CTG4
bA423M11
-
-
AC006448.14
finished
127587 RPCI-11.2 5' / 5'
1 / 84039
- / -
83937
0.34
Identified
2014-11-01
fetch_ncbi...
humpub
 
83 RP11-166M16
HSCHR17_8_CTG4
bA166M16
-
-
AC007432.9
finished
158045 RPCI-11.1        
  GAP (type-3) length unknown                  
85 RP11-171G2
HSCHR17_9_CTG4
bA171G2
-
-
AC011120.11
finished
167746 RPCI-11.1 3' / 5'
147707 / 1
- / -
20027
0.26
Identified
2014-11-01
fetch_ncbi...
humpub
 
86 DD0002K7INU_L24
HSCHR17_9_CTG4
DD0002K7INU_L24
-
-
AC240577.2
finished
34255 - 3' / 5'
34255 / 25717
- / -
25675
25.27
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
87 CTC-386K3
HSCHR17_9_CTG4
bK386K3
-
-
AC138336.3
finished
94400 CIT-HSP-C        
  GAP (type-3) length unknown                  
89 RP11-1197K16
HSCHR17_1_CTG9
CONTAINER
bA1197K16
-
-
AC130371.4
finished
195613 RPCI-11.5 3' / 5'
8461 / 1
19135 / -
166080
3
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
90 RP13-629P20
HSCHR17_1_CTG9
CONTAINED
bB629P20
-
-
AC127518.8
finished
166080 RPCI-13.3 3' / 5'
166080 / 176479
- / 8461
166080
3
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
89 RP11-1197K16
HSCHR17_1_CTG9
CONTAINER
bA1197K16
-
-
AC130371.4
finished
195613 RPCI-11.5        
  GAP (type-3) length unknown                  
92 RP11-961A15
HSCHR17_1_CTG2
CONTAINER
bA961A15
-
-
AC130343.7
finished
217253 RPCI-11.4 3' / 5'
166974 / 1
18610 / -
30590
4.17
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
93 ABC9-43899000N1
HSCHR17_1_CTG2
CONTAINED
f9A43899000N1
-
-
AC206360.2
finished
30590 ABC9 3' / 5'
30590 / 198644
- / 166974
30590
4.17
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
92 RP11-961A15
HSCHR17_1_CTG2
CONTAINER
bA961A15
-
-
AC130343.7
finished
217253 RPCI-11.4        
  GAP (type-3) length unknown                  
95 RP11-216P6
HSCHR17_2_CTG2
CONTAINER
bA216P6
-
-
AC015884.15
finished
207661 RPCI-11.1 3' / 5'
93112 / 1
80401 / -
38448
18.34
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
96 ABC9-43324000O8
HSCHR17_2_CTG2
CONTAINED
f9A43324000O8
-
-
AC212841.2
finished
38448 ABC9 3' / 5'
38448 / 127261
- / 93112
38448
18.34
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
95 RP11-216P6
HSCHR17_2_CTG2
CONTAINER
bA216P6
-
-
AC015884.15
finished
207661 RPCI-11.1 3' / 5'
163877 / 1
- / -
43276
3.64
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
97 CTD-2507J6
HSCHR17_2_CTG2
bK2507J6
-
-
AC107911.21
finished
88883 CIT-HSP-D2 3' / 3'
88883 / 144546
- / 47138
7972
0.07
Identified
2014-11-01
fetch_ncbi...
humpub
Certificate submitted, not yet approved
98 RP11-818O24
HSCHR17_2_CTG2
bA818O24
-
-
AC032044.28
finished
199656 RPCI-11.3        

Statistics

Clone Summary

Number of gaps
13
Gap types
type-2
1
type-3
12
Total clones
85
Clone HTGS Phases
finished
85
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,023,195
Total finished length of fin clones w/ overlap
9,990,538
Total finished length of fin clones w/o overlap
7,967,343
Total overlap length of fin+unfin clones
2,023,195
Total finished length of fin+unfin clones w/ overlap
9,990,538
Total finished length of fin+unfin clones w/o overlap
7,967,343

AGP errors

# rank accession seq_start seq_end strand error date
1 29 AC129507.10 105,191 33,760 1 For sequence AC129507.10 chr_length = -71430 which is less than 1! (start = 105191 end = 33760) This sequence may be redundant, or its overlaps are wrong Fri, 31 Oct 2014 23:28

Dovetails

# rank accession status length date
1 20 AC216025.3 unfinished 2 Fri, 31 Oct 2014 23:28
2 23 AC129507.10 unfinished 3,154 Fri, 31 Oct 2014 23:28
3 23 AC129507.10 unfinished 73,959 Fri, 31 Oct 2014 23:28
4 27 AC003958.3 unfinished 110,958 Fri, 31 Oct 2014 23:28
5 37 AC068594.15 unfinished 89,904 Fri, 31 Oct 2014 23:28
6 42 AC006070.1 unfinished 81,320 Fri, 31 Oct 2014 23:28
7 53 AC015938.17 unfinished 160,575 Fri, 31 Oct 2014 23:28
8 60 AC023315.4 unfinished 19,233 Fri, 31 Oct 2014 23:28
9 63 AC016482.5 unfinished 122,232 Fri, 31 Oct 2014 23:28
10 67 AC004099.1 unfinished 41,945 Fri, 31 Oct 2014 23:28
11 75 AC115090.8 unfinished 9,217 Fri, 31 Oct 2014 23:28
12 78 AC006449.19 unfinished 135,968 Fri, 31 Oct 2014 23:28
13 82 AC006448.14 unfinished 2 Fri, 31 Oct 2014 23:28
14 89 AC130371.4 unfinished 19,135 Fri, 31 Oct 2014 23:28
15 92 AC130343.7 unfinished 18,610 Fri, 31 Oct 2014 23:28
16 95 AC015884.15 unfinished 80,401 Fri, 31 Oct 2014 23:28
17 98 AC032044.28 unfinished 47,138 Fri, 31 Oct 2014 23:28

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Other links

* quick link - http://q.sanger.ac.uk/7f08lbxc