ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__17 (TPF updated: 2015-05-22)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 CTB-39G8
HSCHR17_1_CTG5
bK39G8
AC003070.2
finished
2 RP11-1022D1
HSCHR17_1_CTG5
bA1022D1
AC217778.1
finished
3 RP11-57A24
HSCHR17_1_CTG5
bA57A24
AC134982.5
finished
4 RP11-300H14
HSCHR17_1_CTG5
bA300H14
AC138688.2
finished
5 RP11-162O14
HSCHR17_1_CTG5
bA162O14
AC127032.8
finished
6 RP11-123O20
HSCHR17_1_CTG5
bA123O20
AC217772.2
finished
7 RP11-111I23
HSCHR17_1_CTG5
bA111I23
AC217779.1
finished
8 RP11-769P22
HSCHR17_1_CTG5
bA769P22
BX544879.6
finished
9 RP11-80L9
HSCHR17_1_CTG5
bA80L9
AC217770.1
finished
10 RP11-620A22
HSCHR17_1_CTG5
bA620A22
AC225613.2
finished
11 ABC14-139C6
HSCHR17_1_CTG5
f14A139C6
AC244161.3
finished
  GAP (type-2) length unknown    
13 ABC14-139C7
HSCHR17_1_CTG5
f14A139C7
AC244163.4
finished
14 RP11-1070B7
HSCHR17_1_CTG5
bA1070B7
AC139677.4
finished
15 RP11-619A10
HSCHR17_1_CTG5
bA619A10
AC217775.1
finished
16 RP11-84A7
HSCHR17_1_CTG5
bA84A7
AC243906.3
finished
17 RP11-220N20
HSCHR17_1_CTG5
bA220N20
AC019319.9
finished
  GAP (type-3) length unknown    
19 RP11-1228E12
HSCHR17_1_CTG1
bA1228E12
AC240565.4
finished
20 ABC11-48321900O7
HSCHR17_1_CTG1
f11A48321900O7
AC216025.3
finished
21 ABC9-43994100N24
HSCHR17_1_CTG1
f9A43994100N24
AC207589.3
finished
22 ABC10-44636600B17
HSCHR17_1_CTG1
f10A44636600B17
AC214012.3
finished
23 RP11-1260E13
HSCHR17_1_CTG1
CONTAINER
bA1260E13
AC129507.10
finished
24 ABC10-46312400C4
HSCHR17_1_CTG1
CONTAINED
f10A46312400C4
AC211856.4
finished
23 RP11-1260E13
HSCHR17_1_CTG1
CONTAINER
bA1260E13
AC129507.10
finished
25 ABC10-44486500I10
HSCHR17_1_CTG1
CONTAINED
f10A44486500I10
AC243301.3
finished
23 RP11-1260E13
HSCHR17_1_CTG1
CONTAINER
bA1260E13
AC129507.10
finished
  GAP (type-3) length unknown    
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
AC003958.3
finished
28
HSCHR17_1_CTG4
CONTAINED
KF456274
KF456274.1
finished
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
AC003958.3
finished
29 ABC10-44552700E13
HSCHR17_1_CTG4
CONTAINED
f10A44552700E13
AC207056.3
finished
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
AC003958.3
finished
30
HSCHR17_1_CTG4
CONTAINED
KF456272
KF456272.1
finished
27 RP1-18F17
HSCHR17_1_CTG4
CONTAINER
dJ18F17
AC003958.3
finished
  GAP (type-3) length unknown    
32 CTD-2378E21
HSCHR17_2_CTG4
bK2378E21
AC011990.7
finished
33 ABC9-43972200E24
HSCHR17_2_CTG4
f9A43972200E24
AC207965.2
finished
34 RP11-467K17
HSCHR17_2_CTG4
bA467K17
AC005939.1
finished
  GAP (type-3) length unknown    
36 ABC13-47477500G23
HSCHR17_3_CTG4
f13A47477500G23
AC216282.3
finished
37 RP11-285E9
HSCHR17_3_CTG4
bA285E9
AC068594.15
finished
  GAP (type-3) length unknown    
39 RP5-1110E20
HSCHR17_4_CTG4
dJ1110E20
AC004231.2
finished
40 RP11-619M15
HSCHR17_4_CTG4
bA619M15
AC037482.14
finished
  GAP (type-3) length unknown    
42 RP11-206C20
HSCHR17_5_CTG4
bA206C20
AC006070.1
finished
43 ABC9-43961700F1
HSCHR17_5_CTG4
f9A43961700F1
AC209539.6
finished
  GAP (type-3) length unknown    
45 RP11-362K1
HSCHR17_7_CTG4
bA362K1
AC015849.5
finished
46 CTB-186H2
HSCHR17_7_CTG4
bK186H2
AC004675.1
finished
47 RP11-104J23
HSCHR17_7_CTG4
bA104J23
AC069363.10
finished
48 CTB-91J4
HSCHR17_7_CTG4
bK91J4
AC003976.1
finished
49 CH17-235K9
HSCHR17_7_CTG4
bMO235K9
AC233699.3
finished
50 CH17-260O16
HSCHR17_7_CTG4
bMO260O16
AC233700.3
finished
51 CH17-16P3
HSCHR17_7_CTG4
bMO16P3
AC233698.3
finished
52 CTB-75G16
HSCHR17_7_CTG4
bK75G16
AC003042.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
54
HSCHR17_7_CTG4
CONTAINED
KC877639
KC877639.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
55
HSCHR17_7_CTG4
CONTAINED
KC877645
KC877645.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
56
HSCHR17_7_CTG4
CONTAINED
KC877642
KC877642.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
57
HSCHR17_7_CTG4
CONTAINED
KC877650
KC877650.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
58
HSCHR17_7_CTG4
CONTAINED
KC877652
KC877652.1
finished
53 CTD-3194G12
HSCHR17_7_CTG4
CONTAINER
bK3194G12
AC015938.17
finished
59 RP11-445F12
HSCHR17_7_CTG4
bA445F12
AC025882.7
finished
60 RP11-333J10
HSCHR17_7_CTG4
CONTAINER
bA333J10
AC023315.4
finished
61
HSCHR17_7_CTG4
CONTAINED
KF456270
KF456270.1
finished
60 RP11-333J10
HSCHR17_7_CTG4
CONTAINER
bA333J10
AC023315.4
finished
62 CTC-268N12
HSCHR17_7_CTG4
bK268N12
AC003103.2
finished
63 RP11-19G24
HSCHR17_7_CTG4
CONTAINER
bA19G24
AC016482.5
finished
64
HSCHR17_7_CTG4
CONTAINED
KF456271
KF456271.2
finished
63 RP11-19G24
HSCHR17_7_CTG4
CONTAINER
bA19G24
AC016482.5
finished
65 RP11-378E13
HSCHR17_7_CTG4
bA378E13
AC068400.10
finished
66 RP11-451O3
HSCHR17_7_CTG4
bA451O3
AC068447.16
finished
67 CTC-421K24
HSCHR17_7_CTG4
CONTAINER
bK421K24
AC004099.1
finished
68
HSCHR17_7_CTG4
CONTAINED
KC877651
KC877651.1
finished
67 CTC-421K24
HSCHR17_7_CTG4
CONTAINER
bK421K24
AC004099.1
finished
69
HSCHR17_7_CTG4
CONTAINED
KC877655
KC877655.1
finished
67 CTC-421K24
HSCHR17_7_CTG4
CONTAINER
bK421K24
AC004099.1
finished
70 RP11-697E22
HSCHR17_7_CTG4
bA697E22
AC091199.6
finished
71 RP11-115K3
HSCHR17_7_CTG4
bA115K3
AC113211.5
finished
72 RP11-1407O15
HSCHR17_7_CTG4
bA1407O15
AC183087.2
finished
73 RP11-1331M22
HSCHR17_7_CTG4
bA1331M22
AC183084.2
finished
74 RP11-923C2
HSCHR17_7_CTG4
bA923C2
AC124789.12
finished
75 CTC-861O14
HSCHR17_7_CTG4
CONTAINER
bK861O14
AC115090.8
finished
76
HSCHR17_7_CTG4
CONTAINED
KC877653
KC877653.1
finished
75 CTC-861O14
HSCHR17_7_CTG4
CONTAINER
bK861O14
AC115090.8
finished
77 RP11-2L19
HSCHR17_7_CTG4
bA2L19
AC129916.6
finished
78 CTB-58E17
HSCHR17_7_CTG4
CONTAINER
bK58E17
AC006449.19
finished
79
HSCHR17_7_CTG4
CONTAINED
KF456275
KF456275.1
finished
78 CTB-58E17
HSCHR17_7_CTG4
CONTAINER
bK58E17
AC006449.19
finished
  GAP (type-3) length unknown    
81 CTD-2319F6
HSCHR17_8_CTG4
bK2319F6
AC118653.6
finished
82 RP11-423M11
HSCHR17_8_CTG4
bA423M11
AC006448.14
finished
83 RP11-166M16
HSCHR17_8_CTG4
bA166M16
AC007432.9
finished
  GAP (type-3) length unknown    
85 RP11-171G2
HSCHR17_9_CTG4
bA171G2
AC011120.11
finished
86 DD0002K7INU_L24
HSCHR17_9_CTG4
DD0002K7INU_L24
AC240577.2
finished
87 CTC-386K3
HSCHR17_9_CTG4
bK386K3
AC138336.3
finished
  GAP (type-3) length unknown    
89 RP11-1197K16
HSCHR17_1_CTG9
CONTAINER
bA1197K16
AC130371.4
finished
90 RP13-629P20
HSCHR17_1_CTG9
CONTAINED
bB629P20
AC127518.8
finished
89 RP11-1197K16
HSCHR17_1_CTG9
CONTAINER
bA1197K16
AC130371.4
finished
  GAP (type-3) length unknown    
92 RP11-961A15
HSCHR17_1_CTG2
CONTAINER
bA961A15
AC130343.7
finished
93 ABC9-43899000N1
HSCHR17_1_CTG2
CONTAINED
f9A43899000N1
AC206360.2
finished
92 RP11-961A15
HSCHR17_1_CTG2
CONTAINER
bA961A15
AC130343.7
finished
  GAP (type-3) length unknown    
95 RP11-216P6
HSCHR17_2_CTG2
CONTAINER
bA216P6
AC015884.15
finished
96 ABC9-43324000O8
HSCHR17_2_CTG2
CONTAINED
f9A43324000O8
AC212841.2
finished
95 RP11-216P6
HSCHR17_2_CTG2
CONTAINER
bA216P6
AC015884.15
finished
97 CTD-2507J6
HSCHR17_2_CTG2
bK2507J6
AC107911.21
finished
98 RP11-818O24
HSCHR17_2_CTG2
bA818O24
AC032044.28
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 58647 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC003070.2 48571 107217 -
58648 234917 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC217778.1 1 176270 -
234918 239917 3 N 5000 No overlap in database    
239918 449749 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AC134982.5 1 209832 +
449750 454749 5 N 5000 No overlap in database    
454750 637842 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC138688.2 1 183093 -
637843 761665 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC127032.8 63863 187685 +
761666 835325 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC217772.2 89487 163146 +
835326 986092 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC217779.1 30096 180862 +
986093 1046837 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 BX544879.6 116408 177152 +
1046838 1197769 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC217770.1 1 150932 -
1197770 1368289 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC225613.2 1 170520 -
1368290 1388544 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 13 AC244161.3 1 20255 -
1388545 1438544 14 N 50000 contig yes
1438545 1478269 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC244163.4 1 39725 +
1478270 1652154 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC139677.4 1 173885 -
1652155 1754764 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC217775.1 74484 177093 +
1754765 1917522 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC243906.3 26726 189483 +
1917523 1935897 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC019319.9 23486 41860 +
1935898 1985897 20 N 50000 contig no
1985898 2112426 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC240565.4 1 126529 +
2112427 2148861 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC216025.3 3 36437 -
2148862 2185937 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC207589.3 1 37076 -
2185938 2230192 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC214012.3 1 44255 -
2230193 2252798 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC129507.10 105191 127796 -
2252799 2286010 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC211856.4 1 33212 +
2286011 2290722 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC129507.10 69248 73959 -
2290723 2327828 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC243301.3 1 37106 +
2327829 2361588 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 29 AC129507.10 1 33760 -
2361589 2411588 30 N 50000 contig no
2411589 2428176 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 AC003958.3 1 16588 +
2428177 2428462 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 KF456274.1 1 286 -
2428463 2441875 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 AC003958.3 16875 30287 +
2441876 2481960 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 AC207056.3 1 40085 -
2481961 2530848 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 AC003958.3 63048 111935 +
2530849 2531136 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 KF456272.1 1 288 -
2531137 2546745 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 37 AC003958.3 112224 127832 +
2546746 2596745 38 N 50000 contig no
2596746 2642100 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC011990.7 1 45355 +
2642101 2680006 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC207965.2 1 37906 +
2680007 2842450 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC005939.1 17042 179485 +
2842451 2892450 42 N 50000 contig no
2892451 2928914 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 44 AC216282.3 1 36464 +
2928915 2982669 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 44 AC068594.15 114747 168501 +
2982670 3032669 45 N 50000 contig no
3032670 3148534 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 47 AC004231.2 21157 137021 -
3148535 3334612 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 47 AC037482.14 1 186078 -
3334613 3384612 48 N 50000 contig no
3384613 3414526 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 AC006070.1 1 29914 +
3414527 3454957 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 AC209539.6 1 40431 -
3454958 3504957 51 N 50000 contig no
3504958 3709997 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015849.5 1 205040 -
3709998 3789680 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC004675.1 48819 128501 +
3789681 3906365 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC069363.10 1 116685 -
3906366 3971861 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC003976.1 58430 123925 +
3971862 4101441 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC233699.3 93262 222841 +
4101442 4151358 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC233700.3 11303 61219 +
4151359 4357263 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC233698.3 1 205905 -
4357264 4440661 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC003042.1 1 83398 -
4440662 4446362 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 13568 19268 +
4446363 4446912 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877639.1 1 550 -
4446913 4478156 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 19819 51062 +
4478157 4478720 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877645.1 1 564 +
4478721 4484430 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 51627 57336 +
4484431 4484973 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877642.1 1 543 -
4484974 4542923 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 57880 115829 +
4542924 4543457 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877650.1 1 534 -
4543458 4603341 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 116364 176247 +
4603342 4603884 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877652.1 1 543 +
4603885 4607487 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC015938.17 176791 180393 +
4607488 4732696 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC025882.7 1 125209 -
4732697 4807958 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC023315.4 19620 94881 -
4807959 4808344 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KF456270.1 1 386 +
4808345 4827577 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC023315.4 1 19233 -
4827578 4906931 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC003103.2 22447 101800 +
4906932 4913477 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC016482.5 16795 23340 +
4913478 4913814 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KF456271.2 1 337 +
4913815 5036046 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC016482.5 23678 145909 +
5036047 5209599 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC068400.10 1 173553 -
5209600 5219391 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC068447.16 1 9792 -
5219392 5310033 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC004099.1 3155 93796 +
5310034 5310514 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877651.1 1 481 +
5310515 5323459 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC004099.1 94278 107222 +
5323460 5323949 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877655.1 1 490 +
5323950 5352459 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC004099.1 107713 136222 +
5352460 5512084 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC091199.6 1 159625 -
5512085 5683521 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC113211.5 10189 181625 +
5683522 5807898 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC183087.2 1 124377 -
5807899 5945547 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC183084.2 1 137649 -
5945548 6000729 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC124789.12 1 55182 -
6000730 6136898 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC115090.8 9641 145809 -
6136899 6137321 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KC877653.1 1 423 +
6137322 6146538 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC115090.8 1 9217 -
6146539 6192302 94 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC129916.6 1 45764 -
6192303 6297131 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC006449.19 45770 150598 +
6297132 6297323 96 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 KF456275.1 1 192 +
6297324 6433291 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 97 AC006449.19 150791 286758 +
6433292 6483291 98 N 50000 contig no
6483292 6547866 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 101 AC118653.6 47694 112268 -
6547867 6675451 100 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 101 AC006448.14 1 127585 -
6675452 6749458 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 101 AC007432.9 84039 158045 +
6749459 6799458 102 N 50000 contig no
6799459 6947165 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 105 AC011120.11 1 147707 +
6947166 6981420 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 105 AC240577.2 1 34255 +
6981421 7050104 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 105 AC138336.3 25717 94400 +
7050105 7100104 106 N 50000 contig no
7100105 7108565 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 AC130371.4 1 8461 +
7108566 7274645 108 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 AC127518.8 1 166080 +
7274646 7293780 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 AC130371.4 176479 195613 +
7293781 7343780 110 N 50000 contig no
7343781 7510754 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 113 AC130343.7 1 166974 +
7510755 7541344 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 113 AC206360.2 1 30590 +
7541345 7559954 113 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 113 AC130343.7 198644 217253 +
7559955 7609954 114 N 50000 contig no
7609955 7703066 115 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 119 AC015884.15 1 93112 +
7703067 7741514 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 119 AC212841.2 1 38448 +
7741515 7778131 117 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 119 AC015884.15 127261 163877 +
7778132 7867014 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 119 AC107911.21 1 88883 +
7867015 8011560 119 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 119 AC032044.28 1 144546 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
13
Gap types
type-2
1
type-3
12
Total clones
85
Clone HTGS Phases
finished
85
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,023,195
Total finished length of fin clones w/ overlap
9,990,538
Total finished length of fin clones w/o overlap
7,967,343
Total overlap length of fin+unfin clones
2,023,195
Total finished length of fin+unfin clones w/ overlap
9,990,538
Total finished length of fin+unfin clones w/o overlap
7,967,343

AGP errors

# rank accession seq_start seq_end strand error date
1 29 AC129507.10 105,191 33,760 1 For sequence AC129507.10 chr_length = -71430 which is less than 1! (start = 105191 end = 33760) This sequence may be redundant, or its overlaps are wrong Fri, 22 May 2015 23:20

Dovetails

# rank accession status length date
1 20 AC216025.3 unfinished 2 Fri, 22 May 2015 23:20
2 23 AC129507.10 unfinished 3,154 Fri, 22 May 2015 23:20
3 23 AC129507.10 unfinished 73,959 Fri, 22 May 2015 23:20
4 27 AC003958.3 unfinished 110,958 Fri, 22 May 2015 23:20
5 37 AC068594.15 unfinished 89,904 Fri, 22 May 2015 23:20
6 42 AC006070.1 unfinished 81,320 Fri, 22 May 2015 23:20
7 53 AC015938.17 unfinished 160,575 Fri, 22 May 2015 23:20
8 60 AC023315.4 unfinished 19,233 Fri, 22 May 2015 23:20
9 63 AC016482.5 unfinished 122,232 Fri, 22 May 2015 23:20
10 67 AC004099.1 unfinished 41,945 Fri, 22 May 2015 23:20
11 75 AC115090.8 unfinished 9,217 Fri, 22 May 2015 23:20
12 78 AC006449.19 unfinished 135,968 Fri, 22 May 2015 23:20
13 82 AC006448.14 unfinished 2 Fri, 22 May 2015 23:20
14 89 AC130371.4 unfinished 19,135 Fri, 22 May 2015 23:20
15 92 AC130343.7 unfinished 18,610 Fri, 22 May 2015 23:20
16 95 AC015884.15 unfinished 80,401 Fri, 22 May 2015 23:20
17 98 AC032044.28 unfinished 47,138 Fri, 22 May 2015 23:20

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* quick link - http://q.sanger.ac.uk/7f08lbxc