ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__16 (TPF updated: 2014-04-17)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-70N16
Hschr16_1_ctg3_1
bA70N16
AC020766.10
finished
2 RP11-165M2
Hschr16_1_ctg3_1
bA165M2
EPN details
AC007335.7
finished
  GAP (type-3) length unknown    
4 RP11-502K10
Hschr16_2_ctg3_1
CONTAINER
bA502K10
EPN details
AC009131.6
finished
5 ABC12-49113600A18
Hschr16_2_ctg3_1
CONTAINED
f12A49113600A18
AC208009.3
finished
4 RP11-502K10
Hschr16_2_ctg3_1
CONTAINER
bA502K10
EPN details
AC009131.6
finished
  GAP (type-3) length unknown    
7 CTD-2502C11
HSCHR16_1_CTG1
CONTAINER
bK2502C11
EPN details
AC092291.3
finished
8
HSCHR16_1_CTG1
CONTAINED
KF456163
KF456163.1
finished
7 CTD-2502C11
HSCHR16_1_CTG1
CONTAINER
bK2502C11
EPN details
AC092291.3
finished
9 CH17-32G2
HSCHR16_1_CTG1
bMO32G2
AC243753.3
finished
10 CH17-56E8
HSCHR16_1_CTG1
bMO56E8
AC243915.4
finished
11 CH17-298H2
HSCHR16_1_CTG1
bMO298H2
AC243743.3
finished
12 CH17-204L16
HSCHR16_1_CTG1
bMO204L16
AC243651.3
finished
13 CH17-401B8
HSCHR16_1_CTG1
bMO401B8
AC243791.3
finished
14 CH17-262H22
HSCHR16_1_CTG1
bMO262H22
AC245049.4
finished
15 CH17-311D9
HSCHR16_1_CTG1
bMO311D9
AC243733.3
finished
16 CH17-280O1
HSCHR16_1_CTG1
bMO280O1
AC243742.3
finished
17 CH17-171E8
HSCHR16_1_CTG1
bMO171E8
AC243629.3
finished
18 CH17-403H15
HSCHR16_1_CTG1
bMO403H15
AC243757.3
finished
19 CH17-440C7
HSCHR16_1_CTG1
bMO440C7
AC243824.4
finished
20 CH17-5A7
HSCHR16_1_CTG1
bMO5A7
AC244489.2
finished
21 CH17-104F15
HSCHR16_1_CTG1
bMO104F15
AC243561.3
finished
22 CH17-440J24
HSCHR16_1_CTG1
bMO440J24
AC246789.3
finished
23 CH17-113B15
HSCHR16_1_CTG1
bMO113B15
AC243615.2
finished
24 RP11-419L9
HSCHR16_1_CTG1
bA419L9
EPN details
AC098965.2
finished
  GAP (type-3) length unknown    
26 LA16c-359F1
Hschr16_ctg2
Cl/Pr c359F1/C359F1 swap
EPN details
AL023881.24
finished
27 RP1-196A12
Hschr16_ctg2
CONTAINER
Cl/Pr dJ196A12/PAC196A12 swap
EPN details
AL049542.10
finished
28 ABC12-46746500D7
Hschr16_ctg2
CONTAINED
f12A46746500D7
AC208188.3
finished
27 RP1-196A12
Hschr16_ctg2
CONTAINER
Cl/Pr dJ196A12/PAC196A12 swap
EPN details
AL049542.10
finished
29 ABC10-45497700N16
Hschr16_ctg2
f10A45497700N16
AC210878.3
finished
30 LA16c-356B8
Hschr16_ctg2
Cl/Pr c356B8/C356B8 swap
EPN details
Z98882.4
finished
  GAP (type-3) length unknown    
32
Hschr16_3_ctg1
AC005356
AC005356.1
finished
33 RP11-295D4
Hschr16_3_ctg1
CONTAINER
bA295D4
EPN details
AC012676.5
finished
34 RT140
Hschr16_3_ctg1
CONTAINED
RT140
AC004789.1
finished
33 RP11-295D4
Hschr16_3_ctg1
CONTAINER
bA295D4
EPN details
AC012676.5
finished
35 RP11-35P16
Hschr16_3_ctg1
bA35P16
EPN details
AC007606.8
finished
  GAP (type-3) length unknown    
37 ABC12-47031900J5
Hschr16_4_ctg1
f12A47031900J5
AC226762.3
finished
38 LA16c-439A6
Hschr16_4_ctg1
Cl/Pr c439A6/C439A6 swap
EPN details
AL031723.56
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 173595 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC020766.10 1 173595 +
173596 192462 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC007335.7 1 18867 -
192463 242462 3 N 50000 contig no
242463 273736 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC009131.6 1 31274 +
273737 314123 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC208009.3 1 40387 -
314124 428429 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC009131.6 66530 180835 +
428430 478429 7 N 50000 contig no
478430 575390 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC092291.3 1 96961 +
575391 575776 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 KF456163.1 1 386 +
575777 672980 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC092291.3 97348 194551 +
672981 801293 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243753.3 60817 189129 +
801294 905105 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243915.4 1 103812 -
905106 1056707 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243743.3 1 151602 -
1056708 1164601 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243651.3 1 107894 -
1164602 1262934 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243791.3 101491 199823 +
1262935 1464829 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC245049.4 30123 232017 +
1464830 1675620 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243733.3 1 210791 -
1675621 1860364 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243742.3 31418 216161 +
1860365 2056982 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243629.3 1 196618 -
2056983 2263300 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243757.3 15901 222218 +
2263301 2413909 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243824.4 1 150609 -
2413910 2600279 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC244489.2 39464 225833 +
2600280 2690257 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243561.3 127965 217942 +
2690258 2860543 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC246789.3 1 170286 -
2860544 3076658 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243615.2 23732 239846 +
3076659 3158737 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC098965.2 1 82079 -
3158738 3208737 27 N 50000 contig no
3208738 3244316 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 AL023881.24 1 35579 +
3244317 3254399 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 AL049542.10 101 10183 +
3254400 3285798 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 AC208188.3 1 31399 +
3285799 3286375 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 AL049542.10 40423 40999 +
3286376 3323591 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 AC210878.3 1 37216 +
3323592 3343030 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 Z98882.4 17069 36507 +
3343031 3393030 34 N 50000 contig no
3393031 3431856 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AC005356.1 1 38826 +
3431857 3435841 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AC012676.5 31036 35020 +
3435842 3471997 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AC004789.1 1 36156 -
3471998 3574851 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AC012676.5 69218 172071 +
3574852 3712060 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AC007606.8 20269 157477 +
3712061 3762060 40 N 50000 contig no
3762061 3802880 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 AC226762.3 1 40820 -
3802881 3826042 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 AL031723.56 18094 41255 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-70N16
Hschr16_1_ctg3_1
bA70N16
-
-
AC020766.10
finished
173595 RPCI-11.1 3' / 3'
173595 / 18867
- / -
115581
0.23
Identified
2014-04-09
fetch_ncbi...
humpub
 
2 RP11-165M2
Hschr16_1_ctg3_1
bA165M2
EPN details
Externally Finished
21-JAN-13
AC007335.7
finished
134482 RPCI-11.1        
  GAP (type-3) length unknown                  
4 RP11-502K10
Hschr16_2_ctg3_1
CONTAINER
bA502K10
EPN details
Externally Finished
21-JAN-13
AC009131.6
finished
180835 RPCI-11.2 3' / 3'
31274 / 40387
114306 / -
40387
14.83
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
5 ABC12-49113600A18
Hschr16_2_ctg3_1
CONTAINED
f12A49113600A18
-
-
AC208009.3
finished
40387 ABC12 5' / 5'
1 / 66530
- / 31274
40387
14.83
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
4 RP11-502K10
Hschr16_2_ctg3_1
CONTAINER
bA502K10
EPN details
Externally Finished
21-JAN-13
AC009131.6
finished
180835 RPCI-11.2        
  GAP (type-3) length unknown                  
7 CTD-2502C11
HSCHR16_1_CTG1
CONTAINER
bK2502C11
EPN details
Externally Finished
21-JAN-13
AC092291.3
finished
194551 CIT-HSP-D2 3' / 5'
96961 / 1
97204 / -
386
0.26
Identified
2014-04-09
fetch_ncbi...
humpub
 
8
HSCHR16_1_CTG1
CONTAINED
KF456163
-
-
KF456163.1
finished
386 - 3' / 5'
386 / 97348
- / 96961
386
0.26
Identified
2014-04-09
fetch_ncbi...
humpub
 
7 CTD-2502C11
HSCHR16_1_CTG1
CONTAINER
bK2502C11
EPN details
Externally Finished
21-JAN-13
AC092291.3
finished
194551 CIT-HSP-D2 3' / 5'
194551 / 60817
- / -
60814
0.02
Identified
2014-04-09
fetch_ncbi...
humpub
 
9 CH17-32G2
HSCHR16_1_CTG1
bMO32G2
-
-
AC243753.3
finished
189129 CHORI-17 3' / 3'
189129 / 103812
- / -
103569
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
10 CH17-56E8
HSCHR16_1_CTG1
bMO56E8
-
-
AC243915.4
finished
207381 CHORI-17 5' / 3'
1 / 151602
- / -
59598
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
11 CH17-298H2
HSCHR16_1_CTG1
bMO298H2
-
-
AC243743.3
finished
211200 CHORI-17 5' / 3'
1 / 107894
- / -
100966
4.56
Identified
2014-04-09
fetch_ncbi...
humpub
 
12 CH17-204L16
HSCHR16_1_CTG1
bMO204L16
-
-
AC243651.3
finished
208893 CHORI-17 5' / 5'
1 / 101491
- / -
101489
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
13 CH17-401B8
HSCHR16_1_CTG1
bMO401B8
-
-
AC243791.3
finished
199823 CHORI-17 3' / 5'
199823 / 30123
- / -
30086
4.11
Identified
2014-04-09
fetch_ncbi...
humpub
 
14 CH17-262H22
HSCHR16_1_CTG1
bMO262H22
-
-
AC245049.4
finished
232017 CHORI-17 3' / 3'
232017 / 210791
- / -
11909
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
15 CH17-311D9
HSCHR16_1_CTG1
bMO311D9
-
-
AC243733.3
finished
222700 CHORI-17 5' / 5'
1 / 31418
- / -
31417
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
16 CH17-280O1
HSCHR16_1_CTG1
bMO280O1
-
-
AC243742.3
finished
216161 CHORI-17 3' / 3'
216161 / 196618
- / -
36002
0.01
Identified
2014-04-09
agp2oracle
humpub
 
17 CH17-171E8
HSCHR16_1_CTG1
bMO171E8
-
-
AC243629.3
finished
232622 CHORI-17 5' / 5'
1 / 15901
- / -
15900
0
Identified
2014-04-09
agp2oracle
humpub
 
18 CH17-403H15
HSCHR16_1_CTG1
bMO403H15
-
-
AC243757.3
finished
222218 CHORI-17 3' / 3'
222218 / 150609
- / -
68006
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
19 CH17-440C7
HSCHR16_1_CTG1
bMO440C7
-
-
AC243824.4
finished
218615 CHORI-17 5' / 5'
1 / 39464
- / -
39463
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
20 CH17-5A7
HSCHR16_1_CTG1
bMO5A7
-
-
AC244489.2
finished
225833 CHORI-17 3' / 5'
225833 / 127965
- / -
127835
1.16
Identified
2014-04-09
fetch_ncbi...
humpub
 
21 CH17-104F15
HSCHR16_1_CTG1
bMO104F15
-
-
AC243561.3
finished
217942 CHORI-17 3' / 3'
217942 / 170286
- / -
45044
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
22 CH17-440J24
HSCHR16_1_CTG1
bMO440J24
-
-
AC246789.3
finished
215330 CHORI-17 5' / 5'
1 / 23732
- / -
23731
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
23 CH17-113B15
HSCHR16_1_CTG1
bMO113B15
-
-
AC243615.2
finished
239846 CHORI-17 3' / 3'
239846 / 82079
- / -
109761
0.36
Identified
2014-04-09
fetch_ncbi...
humpub
 
24 RP11-419L9
HSCHR16_1_CTG1
bA419L9
EPN details
Externally Finished
21-JAN-13
AC098965.2
finished
191911 RPCI-11.2        
  GAP (type-3) length unknown                  
26 LA16c-359F1
Hschr16_ctg2
Cl/Pr c359F1/C359F1 swap
EPN details
Submitted to EMBL
12-JAN-09
AL023881.24
finished
35579 LA16 3' / 5'
35579 / 101
- / -
100
1
Identified
2014-04-09
fetch_ncbi...
humpub
 
27 RP1-196A12
Hschr16_ctg2
CONTAINER
Cl/Pr dJ196A12/PAC196A12 swap
EPN details
Submitted to EMBL
12-JAN-09
AL049542.10
finished
58885 RPCI-1 3' / 5'
10183 / 1
18463 / -
31399
11.06
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
28 ABC12-46746500D7
Hschr16_ctg2
CONTAINED
f12A46746500D7
-
-
AC208188.3
finished
31399 ABC12 3' / 5'
31399 / 40423
- / 10183
31399
11.06
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
27 RP1-196A12
Hschr16_ctg2
CONTAINER
Cl/Pr dJ196A12/PAC196A12 swap
EPN details
Submitted to EMBL
12-JAN-09
AL049542.10
finished
58885 RPCI-1 3' / 5'
40999 / 1
- / -
17875
14.71
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
29 ABC10-45497700N16
Hschr16_ctg2
f10A45497700N16
-
-
AC210878.3
finished
37216 ABC10 3' / 5'
37216 / 17069
- / -
16785
2.83
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
30 LA16c-356B8
Hschr16_ctg2
Cl/Pr c356B8/C356B8 swap
EPN details
Submitted to EMBL
12-JAN-09
Z98882.4
finished
36507 LA16        
  GAP (type-3) length unknown                  
32
Hschr16_3_ctg1
AC005356
-
-
AC005356.1
finished
38826 - 3' / 5'
38826 / 31036
- / -
31034
0.05
Identified
2014-04-09
fetch_ncbi...
humpub
 
33 RP11-295D4
Hschr16_3_ctg1
CONTAINER
bA295D4
EPN details
Externally Finished
21-JAN-13
AC012676.5
finished
172071 RPCI-11.2 3' / 3'
35020 / 36156
102854 / -
36156
5.95
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
34 RT140
Hschr16_3_ctg1
CONTAINED
RT140
-
-
AC004789.1
finished
36156 - 5' / 5'
1 / 69218
- / 35020
36156
5.95
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
33 RP11-295D4
Hschr16_3_ctg1
CONTAINER
bA295D4
EPN details
Externally Finished
21-JAN-13
AC012676.5
finished
172071 RPCI-11.2 3' / 5'
172071 / 20269
- / -
20256
0.06
Identified
2014-04-09
fetch_ncbi...
humpub
 
35 RP11-35P16
Hschr16_3_ctg1
bA35P16
EPN details
Externally Finished
21-JAN-13
AC007606.8
finished
157477 RPCI-11.1        
  GAP (type-3) length unknown                  
37 ABC12-47031900J5
Hschr16_4_ctg1
f12A47031900J5
-
-
AC226762.3
finished
40820 ABC12 5' / 5'
1 / 18094
- / -
18092
0.05
Identified
2014-04-09
fetch_ncbi...
humpub
 
38 LA16c-439A6
Hschr16_4_ctg1
Cl/Pr c439A6/C439A6 swap
EPN details
Submitted to EMBL
12-JAN-09
AL031723.56
finished
41255 LA16        

Statistics

Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
33
Clone HTGS Phases
finished
33
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,185,394
Total finished length of fin clones w/ overlap
4,862,048
Total finished length of fin clones w/o overlap
3,676,654
Total overlap length of fin+unfin clones
1,185,394
Total finished length of fin+unfin clones w/ overlap
4,862,048
Total finished length of fin+unfin clones w/o overlap
3,676,654

Dovetails

# rank accession status length date
1 4 AC009131.6 unfinished 114,306 Wed, 16 Apr 2014 23:17
2 7 AC092291.3 unfinished 97,204 Wed, 16 Apr 2014 23:17
3 27 AL049542.10 unfinished 18,463 Wed, 16 Apr 2014 23:17
4 33 AC012676.5 unfinished 102,854 Wed, 16 Apr 2014 23:17

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Other links

* quick link - http://q.sanger.ac.uk/igecnimf