ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__16 (TPF updated: 2015-05-22)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP11-70N16
Hschr16_1_ctg3_1
bA70N16
AC020766.10
finished
2 RP11-165M2
Hschr16_1_ctg3_1
bA165M2
AC007335.7
finished
  GAP (type-3) length unknown    
4 RP11-502K10
Hschr16_2_ctg3_1
CONTAINER
bA502K10
AC009131.6
finished
5 ABC12-49113600A18
Hschr16_2_ctg3_1
CONTAINED
f12A49113600A18
AC208009.3
finished
4 RP11-502K10
Hschr16_2_ctg3_1
CONTAINER
bA502K10
AC009131.6
finished
  GAP (type-3) length unknown    
7 CTD-2502C11
HSCHR16_1_CTG1
CONTAINER
bK2502C11
AC092291.3
finished
8
HSCHR16_1_CTG1
CONTAINED
KF456163
KF456163.1
finished
7 CTD-2502C11
HSCHR16_1_CTG1
CONTAINER
bK2502C11
AC092291.3
finished
9 CH17-32G2
HSCHR16_1_CTG1
bMO32G2
AC243753.3
finished
10 CH17-56E8
HSCHR16_1_CTG1
bMO56E8
AC243915.4
finished
11 CH17-298H2
HSCHR16_1_CTG1
bMO298H2
AC243743.3
finished
12 CH17-204L16
HSCHR16_1_CTG1
bMO204L16
AC243651.3
finished
13 CH17-401B8
HSCHR16_1_CTG1
bMO401B8
AC243791.3
finished
14 CH17-262H22
HSCHR16_1_CTG1
bMO262H22
AC245049.4
finished
15 CH17-311D9
HSCHR16_1_CTG1
bMO311D9
AC243733.3
finished
16 CH17-280O1
HSCHR16_1_CTG1
bMO280O1
AC243742.3
finished
17 CH17-171E8
HSCHR16_1_CTG1
bMO171E8
AC243629.3
finished
18 CH17-403H15
HSCHR16_1_CTG1
bMO403H15
AC243757.3
finished
19 CH17-440C7
HSCHR16_1_CTG1
bMO440C7
AC243824.4
finished
20 CH17-5A7
HSCHR16_1_CTG1
bMO5A7
AC244489.2
finished
21 CH17-104F15
HSCHR16_1_CTG1
bMO104F15
AC243561.3
finished
22 CH17-440J24
HSCHR16_1_CTG1
bMO440J24
AC246789.3
finished
23 CH17-113B15
HSCHR16_1_CTG1
bMO113B15
AC243615.2
finished
24 RP11-419L9
HSCHR16_1_CTG1
bA419L9
AC098965.2
finished
  GAP (type-3) length unknown    
26 LA16c-359F1
Hschr16_ctg2
c359F1
AL023881.24
finished
27 RP1-196A12
Hschr16_ctg2
CONTAINER
dJ196A12
AL049542.10
finished
28 ABC12-46746500D7
Hschr16_ctg2
CONTAINED
f12A46746500D7
AC208188.3
finished
27 RP1-196A12
Hschr16_ctg2
CONTAINER
dJ196A12
AL049542.10
finished
29 ABC10-45497700N16
Hschr16_ctg2
f10A45497700N16
AC210878.3
finished
30 LA16c-356B8
Hschr16_ctg2
c356B8
Z98882.4
finished
  GAP (type-3) length unknown    
32
Hschr16_3_ctg1
AC005356
AC005356.1
finished
33 RP11-295D4
Hschr16_3_ctg1
CONTAINER
bA295D4
AC012676.5
finished
34 RT140
Hschr16_3_ctg1
CONTAINED
RT140
AC004789.1
finished
33 RP11-295D4
Hschr16_3_ctg1
CONTAINER
bA295D4
AC012676.5
finished
35 RP11-35P16
Hschr16_3_ctg1
bA35P16
AC007606.8
finished
  GAP (type-3) length unknown    
37 ABC12-47031900J5
Hschr16_4_ctg1
f12A47031900J5
AC226762.3
finished
38 LA16c-439A6
Hschr16_4_ctg1
c439A6
AL031723.56
finished
  GAP (type-3) length unknown    
40 RP11-707E24
Hschr16_3_ctg3_1
CONTAINER
bA707E24
AC092379.4
finished
41 ABC10-44051000F11
Hschr16_3_ctg3_1
CONTAINED
f10A44051000F11
AC203638.2
finished
40 RP11-707E24
Hschr16_3_ctg3_1
CONTAINER
bA707E24
AC092379.4
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 173595 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC020766.10 1 173595 +
173596 192462 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC007335.7 1 18867 -
192463 242462 3 N 50000 contig no
242463 273736 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC009131.6 1 31274 +
273737 314123 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC208009.3 1 40387 -
314124 428429 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AC009131.6 66530 180835 +
428430 478429 7 N 50000 contig no
478430 575390 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC092291.3 1 96961 +
575391 575776 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 KF456163.1 1 386 +
575777 672980 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC092291.3 97348 194551 +
672981 801293 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243753.3 60817 189129 +
801294 905105 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243915.4 1 103812 -
905106 1056707 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243743.3 1 151602 -
1056708 1164601 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243651.3 1 107894 -
1164602 1262934 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243791.3 101491 199823 +
1262935 1464829 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC245049.4 30123 232017 +
1464830 1675620 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243733.3 1 210791 -
1675621 1860364 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243742.3 31418 216161 +
1860365 2056982 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243629.3 1 196618 -
2056983 2263300 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243757.3 15901 222218 +
2263301 2413909 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243824.4 1 150609 -
2413910 2600279 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC244489.2 39464 225833 +
2600280 2690257 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243561.3 127965 217942 +
2690258 2860543 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC246789.3 1 170286 -
2860544 3076658 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC243615.2 23732 239846 +
3076659 3158737 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 26 AC098965.2 1 82079 -
3158738 3208737 27 N 50000 contig no
3208738 3244316 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 AL023881.24 1 35579 +
3244317 3254399 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 AL049542.10 101 10183 +
3254400 3285798 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 AC208188.3 1 31399 +
3285799 3286375 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 AL049542.10 40423 40999 +
3286376 3323591 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 AC210878.3 1 37216 +
3323592 3343030 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 Z98882.4 17069 36507 +
3343031 3393030 34 N 50000 contig no
3393031 3431856 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AC005356.1 1 38826 +
3431857 3435841 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AC012676.5 31036 35020 +
3435842 3471997 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AC004789.1 1 36156 -
3471998 3574851 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AC012676.5 69218 172071 +
3574852 3712060 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 39 AC007606.8 20269 157477 +
3712061 3762060 40 N 50000 contig no
3762061 3802880 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 AC226762.3 1 40820 -
3802881 3826042 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 AL031723.56 18094 41255 +
3826043 3876042 43 N 50000 contig no
3876043 3958942 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 AC092379.4 99401 182300 -
3958943 4026263 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 AC203638.2 1 67321 +
4026264 4066167 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 46 AC092379.4 1 39904 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
6
Gap types
type-3
6
Total clones
35
Clone HTGS Phases
finished
35
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,308,188
Total finished length of fin clones w/ overlap
5,084,252
Total finished length of fin clones w/o overlap
3,776,064
Total overlap length of fin+unfin clones
1,308,188
Total finished length of fin+unfin clones w/ overlap
5,084,252
Total finished length of fin+unfin clones w/o overlap
3,776,064

Dovetails

# rank accession status length date
1 4 AC009131.6 unfinished 114,306 Fri, 29 May 2015 23:12
2 7 AC092291.3 unfinished 97,204 Fri, 29 May 2015 23:12
3 27 AL049542.10 unfinished 18,463 Fri, 29 May 2015 23:12
4 33 AC012676.5 unfinished 102,854 Fri, 29 May 2015 23:12

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* quick link - http://q.sanger.ac.uk/igecnimf