ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__12 (TPF updated: 2014-09-20)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 ABC7-42389800N19
HSCHR12_1_CTG1
f7A42389800N19
AC215219.3
finished
2 ABC22-2602C16
HSCHR12_1_CTG1
f22A2602C16
AC238894.3
finished
3 RP11-598F7
HSCHR12_1_CTG1
bA598F7
AC026369.21
finished
  GAP (type-3) length unknown    
5 RP11-1151B7
HSCHR12_1_CTG2
CONTAINER
bA1151B7
AC022363.24
finished
6 ABC10-46305800A11
HSCHR12_1_CTG2
CONTAINED
f10A46305800A11
AC205793.4
finished
5 RP11-1151B7
HSCHR12_1_CTG2
CONTAINER
bA1151B7
AC022363.24
finished
  GAP (type-3) length unknown    
8 RP11-144O23
HSCHR12_2_CTG2
bA144O23
AC006518.17
finished
9 RP11-673D15
HSCHR12_2_CTG2
CONTAINER
bA673D15
AC018630.40
finished
10 WI2-3110L22
HSCHR12_2_CTG2
CONTAINED
fW3110L22
AC242308.1
finished
11 ABC11-48320900C10
HSCHR12_2_CTG2
CONTAINED
f11A48320900C10
AC217021.3
finished
9 RP11-673D15
HSCHR12_2_CTG2
CONTAINER
bA673D15
AC018630.40
finished
12 RP11-785H5
HSCHR12_2_CTG2
bA785H5
AC134349.2
finished
  GAP (type-3) length unknown    
14 RP11-58A17
HSCHR12_1_CTG2_1
CONTAINER
bA58A17
AC084033.33
finished
15
HSCHR12_1_CTG2_1
CONTAINED
KF495733
KF495733.1
finished
14 RP11-58A17
HSCHR12_1_CTG2_1
CONTAINER
bA58A17
AC084033.33
finished
16 ABC9-44000200A8
HSCHR12_1_CTG2_1
CONTAINED
f9A44000200A8
AC208716.3
finished
14 RP11-58A17
HSCHR12_1_CTG2_1
CONTAINER
bA58A17
AC084033.33
finished
  GAP (type-3) length unknown    
18 RP11-557F20
HSCHR12_2_CTG2_1
CONTAINER
bA557F20
AC068305.30
finished
19 ABC9-43832800J17
HSCHR12_2_CTG2_1
CONTAINED
f9A43832800J17
AC208500.2
finished
18 RP11-557F20
HSCHR12_2_CTG2_1
CONTAINER
bA557F20
AC068305.30
finished
  GAP (type-3) length unknown    
21 RP11-399D15
HSCHR12_3_CTG2_1
CONTAINER
bA399D15
AC079953.28
finished
22 ABC12-49050900E13
HSCHR12_3_CTG2_1
CONTAINED
f12A49050900E13
AC225709.3
finished
21 RP11-399D15
HSCHR12_3_CTG2_1
CONTAINER
bA399D15
AC079953.28
finished
  GAP (type-3) length unknown    
24 RP5-1135M4
HSCHR12_4_CTG2_1
dJ1135M4
AC005885.1
finished
25 ABC10-45521700B16
HSCHR12_4_CTG2_1
f10A45521700B16
AC203650.3
finished
26 RP4-809F18
HSCHR12_4_CTG2_1
dJ809F18
EPN details
AC007368.11
finished
  GAP (type-3) length unknown    
28 RP11-200K12
HSCHR12_5_CTG2_1
bA200K12
AC127071.3
finished
29 ABC13-1856170F5
HSCHR12_5_CTG2_1
f13A1856170F5
AC217627.3
finished
  GAP (type-3) length unknown    
31 RP11-380L11
HSCHR12_6_CTG2_1
CONTAINER
bA380L11
AC079315.30
finished
32 ABC12-46796200N9
HSCHR12_6_CTG2_1
CONTAINED
f12A46796200N9
AC208069.3
finished
31 RP11-380L11
HSCHR12_6_CTG2_1
CONTAINER
bA380L11
AC079315.30
finished
  GAP (type-3) length unknown    
34 ABC10-43644100O18
HSCHR12_4_CTG2
f10A43644100O18
AC204960.3
finished
35 RP11-627K11
HSCHR12_4_CTG2
bA627K11
AC024940.39
finished
  GAP (type-3) length unknown    
37
HSCHR12_7_CTG2_1
AC155072
AC155072.1
finished
38 WI2-2806E2
HSCHR12_7_CTG2_1
fW2806E2
AC234331.4
finished
  GAP (type-3) length unknown    
40 RP11-711K1
HSCHR12_5_CTG2
bA711K1
AC010176.12
finished
41 ABC24-2362C23
HSCHR12_5_CTG2
f24A2362C23
AC238694.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 16621 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC215219.3 19119 35739 -
16622 56835 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC238894.3 1 40214 -
56836 167313 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC026369.21 1 110478 -
167314 217313 4 N 50000 contig no
217314 254008 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC022363.24 1 36695 +
254009 294896 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC205793.4 1 40888 +
294897 338305 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AC022363.24 71525 114933 +
338306 388305 8 N 50000 contig no
388306 562040 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 AC006518.17 1 173735 +
562041 669628 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 AC018630.40 58276 165863 -
669629 711603 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 AC242308.1 1 41975 -
711604 743765 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 AC217021.3 10380 42541 +
743766 759851 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 AC018630.40 1 16086 -
759852 796781 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 AC134349.2 1 36930 -
796782 846781 15 N 50000 contig no
846782 851517 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 AC084033.33 1 4736 +
851518 851676 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 KF495733.1 1 159 -
851677 860450 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 AC084033.33 4896 13669 +
860451 900785 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 AC208716.3 1 40335 -
900786 1017963 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 AC084033.33 44846 162023 +
1017964 1067963 21 N 50000 contig no
1067964 1076696 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AC068305.30 1 8733 +
1076697 1118426 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AC208500.2 1 41730 +
1118427 1206823 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AC068305.30 43415 131811 +
1206824 1256823 25 N 50000 contig no
1256824 1358035 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 AC079953.28 1 101212 +
1358036 1397896 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 AC225709.3 1 39861 -
1397897 1411708 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 28 AC079953.28 134897 148708 +
1411709 1461708 29 N 50000 contig no
1461709 1522681 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 AC005885.1 23808 84780 -
1522682 1563958 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 AC203650.3 1 41277 -
1563959 1646353 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 32 AC007368.11 11630 94024 +
1646354 1696353 33 N 50000 contig no
1696354 1736796 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 35 AC127071.3 1 40443 +
1736797 1774427 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 35 AC217627.3 1 37631 +
1774428 1824427 36 N 50000 contig no
1824428 1900160 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 AC079315.30 1 75733 +
1900161 1935253 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 AC208069.3 1 35093 +
1935254 1945929 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 AC079315.30 110775 121450 +
1945930 1995929 40 N 50000 contig no
1995930 2033472 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 AC204960.3 1 37543 -
2033473 2234068 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 AC024940.39 1 200596 -
2234069 2284068 43 N 50000 contig no
2284069 2304823 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 45 AC155072.1 11246 32000 -
2304824 2341091 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 45 AC234331.4 1 36268 -
2341092 2391091 46 N 50000 contig no
2391092 2391905 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 48 AC010176.12 1 814 +
2391906 2431181 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 48 AC238694.2 1 39276 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 ABC7-42389800N19
HSCHR12_1_CTG1
f7A42389800N19
-
-
AC215219.3
finished
35739 ABC7 5' / 3'
19119 / 40214
- / -
16987
12.75
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
2 ABC22-2602C16
HSCHR12_1_CTG1
f22A2602C16
-
-
AC238894.3
finished
40215 ABC22 5' / 3'
1 / 110478
- / 1640
24331
28.95
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
3 RP11-598F7
HSCHR12_1_CTG1
bA598F7
-
-
AC026369.21
finished
136725 RPCI-11.3        
  GAP (type-3) length unknown                  
5 RP11-1151B7
HSCHR12_1_CTG2
CONTAINER
bA1151B7
-
-
AC022363.24
finished
114933 RPCI-11.4 3' / 5'
36695 / 1
43409 / -
40888
17.72
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
6 ABC10-46305800A11
HSCHR12_1_CTG2
CONTAINED
f10A46305800A11
-
-
AC205793.4
finished
40888 ABC10 3' / 5'
40888 / 71525
- / 36695
40888
17.72
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
5 RP11-1151B7
HSCHR12_1_CTG2
CONTAINER
bA1151B7
-
-
AC022363.24
finished
114933 RPCI-11.4        
  GAP (type-3) length unknown                  
8 RP11-144O23
HSCHR12_2_CTG2
bA144O23
-
-
AC006518.17
finished
173735 RPCI-11.1 3' / 3'
173735 / 165863
- / -
2005
0
Identified
2014-09-20
fetch_ncbi...
humpub
 
9 RP11-673D15
HSCHR12_2_CTG2
CONTAINER
bA673D15
-
-
AC018630.40
finished
167868 RPCI-11.3 5' / 3'
58276 / 41975
42532 / -
41975
0.35
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
10 WI2-3110L22
HSCHR12_2_CTG2
CONTAINED
fW3110L22
-
-
AC242308.1
finished
41975 Whitehead fosmid 5' / 5'
1 / 10380
- / -
10377
0.56
Identified
2014-09-20
fetch_ncbi...
humpub
 
11 ABC11-48320900C10
HSCHR12_2_CTG2
CONTAINED
f11A48320900C10
-
-
AC217021.3
finished
42541 ABC11 3' / 3'
42541 / 16086
- / 133420
42541
0.56
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
9 RP11-673D15
HSCHR12_2_CTG2
CONTAINER
bA673D15
-
-
AC018630.40
finished
167868 RPCI-11.3 5' / 3'
1 / 36930
- / -
2004
0
Identified
2014-09-20
fetch_ncbi...
humpub
 
12 RP11-785H5
HSCHR12_2_CTG2
bA785H5
-
-
AC134349.2
finished
38934 RPCI-11.3        
  GAP (type-3) length unknown                  
14 RP11-58A17
HSCHR12_1_CTG2_1
CONTAINER
bA58A17
-
-
AC084033.33
finished
162023 RPCI-11.1 3' / 3'
4736 / 159
157128 / -
159
1.26
Identified
2014-09-20
agp2oracle
humpub
 
15
HSCHR12_1_CTG2_1
CONTAINED
KF495733
-
-
KF495733.1
finished
159 - 5' / 5'
1 / 4896
- / 4736
159
1.26
Identified
2014-09-20
agp2oracle
humpub
 
14 RP11-58A17
HSCHR12_1_CTG2_1
CONTAINER
bA58A17
-
-
AC084033.33
finished
162023 RPCI-11.1 3' / 3'
13669 / 40335
117178 / -
40335
29.84
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
16 ABC9-44000200A8
HSCHR12_1_CTG2_1
CONTAINED
f9A44000200A8
-
-
AC208716.3
finished
40335 ABC9 5' / 5'
1 / 44846
- / 13669
40335
29.84
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
14 RP11-58A17
HSCHR12_1_CTG2_1
CONTAINER
bA58A17
-
-
AC084033.33
finished
162023 RPCI-11.1        
  GAP (type-3) length unknown                  
18 RP11-557F20
HSCHR12_2_CTG2_1
CONTAINER
bA557F20
-
-
AC068305.30
finished
131811 RPCI-11.2 3' / 5'
8733 / 1
88397 / -
41730
20.6
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
19 ABC9-43832800J17
HSCHR12_2_CTG2_1
CONTAINED
f9A43832800J17
-
-
AC208500.2
finished
41730 ABC9 3' / 5'
41730 / 43415
- / 8733
41730
20.6
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
18 RP11-557F20
HSCHR12_2_CTG2_1
CONTAINER
bA557F20
-
-
AC068305.30
finished
131811 RPCI-11.2        
  GAP (type-3) length unknown                  
21 RP11-399D15
HSCHR12_3_CTG2_1
CONTAINER
bA399D15
-
-
AC079953.28
finished
148708 RPCI-11.2 3' / 3'
101212 / 39861
13812 / -
39861
18.55
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
22 ABC12-49050900E13
HSCHR12_3_CTG2_1
CONTAINED
f12A49050900E13
-
-
AC225709.3
finished
39861 ABC12 5' / 5'
1 / 134897
- / 101212
39861
18.55
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
21 RP11-399D15
HSCHR12_3_CTG2_1
CONTAINER
bA399D15
-
-
AC079953.28
finished
148708 RPCI-11.2        
  GAP (type-3) length unknown                  
24 RP5-1135M4
HSCHR12_4_CTG2_1
dJ1135M4
-
-
AC005885.1
finished
84780 RPCI-5 5' / 3'
23808 / 41277
- / -
23790
0.25
Identified
2014-09-20
fetch_ncbi...
humpub
 
25 ABC10-45521700B16
HSCHR12_4_CTG2_1
f10A45521700B16
-
-
AC203650.3
finished
41277 ABC10 5' / 5'
1 / 11630
- / -
11621
52.6
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate approved
26 RP4-809F18
HSCHR12_4_CTG2_1
dJ809F18
EPN details
Externally Finished
21-JAN-13
AC007368.11
finished
94024 RPCI-4        
  GAP (type-3) length unknown                  
28 RP11-200K12
HSCHR12_5_CTG2_1
bA200K12
-
-
AC127071.3
finished
63578 RPCI-11.1 3' / 5'
40443 / 1
- / -
23110
1.73
Identified
2014-09-20
fetch_ncbi...
humpub
Certificate submitted, not yet approved
29 ABC13-1856170F5
HSCHR12_5_CTG2_1
f13A1856170F5
-
-
AC217627.3
finished
37631 ABC13        
  GAP (type-3) length unknown                  
31 RP11-380L11
HSCHR12_6_CTG2_1
CONTAINER
bA380L11
-
-
AC079315.30
finished
121450 RPCI-11.2 3' / 5'
75733 / 1
10676 / -
35093
0.67
Identified
2014-09-20
fetch_ncbi...
humpub
 
32 ABC12-46796200N9
HSCHR12_6_CTG2_1
CONTAINED
f12A46796200N9
-
-
AC208069.3
finished
35093 ABC12 3' / 5'
35093 / 110775
- / 75733
35093
0.67
Identified
2014-09-20
fetch_ncbi...
humpub
 
31 RP11-380L11
HSCHR12_6_CTG2_1
CONTAINER
bA380L11
-
-
AC079315.30
finished
121450 RPCI-11.2        
  GAP (type-3) length unknown                  
34 ABC10-43644100O18
HSCHR12_4_CTG2
f10A43644100O18
-
-
AC204960.3
finished
37543 ABC10 5' / 3'
1 / 200596
- / -
5356
0.04
Identified
2014-09-20
fetch_ncbi...
humpub
 
35 RP11-627K11
HSCHR12_4_CTG2
bA627K11
-
-
AC024940.39
finished
205952 RPCI-11.3        
  GAP (type-3) length unknown                  
37
HSCHR12_7_CTG2_1
AC155072
-
-
AC155072.1
finished
32000 - 5' / 3'
11246 / 36268
- / -
11245
0.05
Identified
2014-09-20
fetch_ncbi...
humpub
 
38 WI2-2806E2
HSCHR12_7_CTG2_1
fW2806E2
-
-
AC234331.4
finished
36268 Whitehead fosmid        
  GAP (type-3) length unknown                  
40 RP11-711K1
HSCHR12_5_CTG2
bA711K1
-
-
AC010176.12
finished
202103 RPCI-11.3 3' / 3'
814 / 39276
161941 / -
37947
10.04
Identified
2014-09-20
agp2oracle
humpub
 
41 ABC24-2362C23
HSCHR12_5_CTG2
f24A2362C23
-
-
AC238694.2
finished
39276 ABC24        

Statistics

Clone Summary

Number of gaps
11
Gap types
type-3
11
Total clones
30
Clone HTGS Phases
finished
30
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
299,636
Total finished length of fin clones w/ overlap
2,429,155
Total finished length of fin clones w/o overlap
2,129,519
Total overlap length of fin+unfin clones
299,636
Total finished length of fin+unfin clones w/ overlap
2,429,155
Total finished length of fin+unfin clones w/o overlap
2,129,519

Dovetails

# rank accession status length date
1 3 AC026369.21 unfinished 1,640 Fri, 19 Sep 2014 23:11
2 5 AC022363.24 unfinished 43,409 Fri, 19 Sep 2014 23:11
3 9 AC018630.40 unfinished 42,532 Fri, 19 Sep 2014 23:11
4 14 AC084033.33 unfinished 157,128 Fri, 19 Sep 2014 23:11
5 18 AC068305.30 unfinished 88,397 Fri, 19 Sep 2014 23:11
6 21 AC079953.28 unfinished 13,812 Fri, 19 Sep 2014 23:11
7 31 AC079315.30 unfinished 10,676 Fri, 19 Sep 2014 23:11
8 40 AC010176.12 unfinished 23,376 Fri, 19 Sep 2014 23:11

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/nom2a4a7