ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__21 (TPF updated: 2015-04-26)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP1-31B5
Hschr21_1_ctg1_1
CONTAINER
dJ31B5
AF130247.2
finished
2 ABC24-1849L17
Hschr21_1_ctg1_1
CONTAINED
f24A1849L17
AC238684.2
finished
1 RP1-31B5
Hschr21_1_ctg1_1
CONTAINER
dJ31B5
AF130247.2
finished
3
Hschr21_1_ctg1_1
CONTAINED
KF456998
KF456998.1
finished
1 RP1-31B5
Hschr21_1_ctg1_1
CONTAINER
dJ31B5
AF130247.2
finished
  GAP (type-3) length unknown    
5 RP11-745D19
Hschr21_2_ctg1_1
CONTAINER
bA745D19
AP000705.2
finished
6
Hschr21_2_ctg1_1
CONTAINED
KF510509
KF510509.1
finished
5 RP11-745D19
Hschr21_2_ctg1_1
CONTAINER
bA745D19
AP000705.2
finished
7
Hschr21_2_ctg1_1
CONTAINED
KF457091
KF457091.1
finished
5 RP11-745D19
Hschr21_2_ctg1_1
CONTAINER
bA745D19
AP000705.2
finished
8
Hschr21_2_ctg1_1
CONTAINED
KF511346
KF511346.1
finished
5 RP11-745D19
Hschr21_2_ctg1_1
CONTAINER
bA745D19
AP000705.2
finished
9
Hschr21_2_ctg1_1
CONTAINED
KF510504
KF510504.1
finished
5 RP11-745D19
Hschr21_2_ctg1_1
CONTAINER
bA745D19
AP000705.2
finished
10 ABC10-43666900A3
Hschr21_2_ctg1_1
f10A43666900A3
AC203635.2
finished
11 RP11-662K22
Hschr21_2_ctg1_1
CONTAINER
bA662K22
AP000657.3
finished
12
Hschr21_2_ctg1_1
CONTAINED
KF457090
KF457090.1
finished
11 RP11-662K22
Hschr21_2_ctg1_1
CONTAINER
bA662K22
AP000657.3
finished
  GAP (type-3) length unknown    
14 CMP21-S12
Hschr21_3_ctg1_1
CONTAINER
cmp21ES12
AP000280.3
finished
15
Hschr21_3_ctg1_1
CONTAINED
KF459715
KF459715.1
finished
14 CMP21-S12
Hschr21_3_ctg1_1
CONTAINER
cmp21ES12
AP000280.3
finished
16
Hschr21_3_ctg1_1
CONTAINED
KF511381
KF511381.1
finished
14 CMP21-S12
Hschr21_3_ctg1_1
CONTAINER
cmp21ES12
AP000280.3
finished
17 ABC10-45527300K20
Hschr21_3_ctg1_1
CONTAINED
f10A45527300K20
AC203640.2
finished
14 CMP21-S12
Hschr21_3_ctg1_1
CONTAINER
cmp21ES12
AP000280.3
finished
  GAP (type-3) length unknown    
19 RP1-PACB5
Hschr21_4_ctg1_1
CONTAINER
dJPACB5
AP000300.1
finished
20
Hschr21_4_ctg1_1
CONTAINED
KF457222
KF457222.1
finished
19 RP1-PACB5
Hschr21_4_ctg1_1
CONTAINER
dJPACB5
AP000300.1
finished
21
Hschr21_4_ctg1_1
CONTAINED
KF510547
KF510547.1
finished
19 RP1-PACB5
Hschr21_4_ctg1_1
CONTAINER
dJPACB5
AP000300.1
finished
22 ABC9-43837900D12
Hschr21_4_ctg1_1
f9A43837900D12
AC207981.3
finished
23 CMP21-4G8
Hschr21_4_ctg1_1
cmp21E4G8
AP000302.1
finished
  GAP (type-3) length unknown    
25
Hschr21_5_ctg2
AP001475
AP001475.1
finished
26 ABC12-49051600I19
Hschr21_5_ctg2
f12A49051600I19
AC226155.3
finished
27
Hschr21_5_ctg2
AP001468
AP001468.1
finished
  GAP (type-3) length unknown    
29
Hschr21_6_ctg1_1
CONTAINER
AP000432
AP000432.4
finished
30
Hschr21_6_ctg1_1
CONTAINED
KF457038
KF457038.1
finished
29
Hschr21_6_ctg1_1
CONTAINER
AP000432
AP000432.4
finished
31
Hschr21_6_ctg1_1
CONTAINED
KC877791
KC877791.1
finished
29
Hschr21_6_ctg1_1
CONTAINER
AP000432
AP000432.4
finished
32
Hschr21_6_ctg1_1
CONTAINED
KC877788
KC877788.1
finished
29
Hschr21_6_ctg1_1
CONTAINER
AP000432
AP000432.4
finished
33 ABC9-43863900H3
Hschr21_6_ctg1_1
CONTAINED
f9A43863900H3
AC208585.5
finished
29
Hschr21_6_ctg1_1
CONTAINER
AP000432
AP000432.4
finished
  GAP (type-3) length unknown    
35
Hschr21_8_ctg1_1
CONTAINER
AP000457
AP000457.3
finished
36
Hschr21_8_ctg1_1
CONTAINED
KF457030
KF457030.1
finished
35
Hschr21_8_ctg1_1
CONTAINER
AP000457
AP000457.3
finished
37
Hschr21_8_ctg1_1
CONTAINED
KF457028
KF457028.1
finished
35
Hschr21_8_ctg1_1
CONTAINER
AP000457
AP000457.3
finished
38 ABC14-50175200C15
Hschr21_8_ctg1_1
CONTAINED
f14A50175200C15
AC226180.3
finished
35
Hschr21_8_ctg1_1
CONTAINER
AP000457
AP000457.3
finished
39
Hschr21_8_ctg1_1
CONTAINED
KF510489
KF510489.1
finished
35
Hschr21_8_ctg1_1
CONTAINER
AP000457
AP000457.3
finished
40
Hschr21_8_ctg1_1
CONTAINED
KC877783
KC877783.1
finished
35
Hschr21_8_ctg1_1
CONTAINER
AP000457
AP000457.3
finished
41
Hschr21_8_ctg1_1
CONTAINED
KC877795
KC877795.1
finished
35
Hschr21_8_ctg1_1
CONTAINER
AP000457
AP000457.3
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 122 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AF130247.2 1 122 +
123 40419 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AC238684.2 1 40297 -
40420 57525 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AF130247.2 27834 44939 +
57526 57815 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 KF456998.1 1 290 +
57816 101455 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 5 AF130247.2 45230 88869 +
101456 151455 6 N 50000 contig no
151456 178955 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 AP000705.2 1 27500 +
178956 179336 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 KF510509.1 1 381 +
179337 183296 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 AP000705.2 27883 31842 +
183297 183355 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 KF457091.1 1 59 -
183356 211141 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 AP000705.2 31902 59687 +
211142 211527 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 KF511346.1 1 386 +
211528 277485 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 AP000705.2 60073 126030 +
277486 277872 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 KF510504.1 1 387 +
277873 278343 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 AP000705.2 126419 126889 +
278344 314947 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 AC203635.2 1 36604 -
314948 322387 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 AP000657.3 11946 19385 +
322388 322636 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 KF457090.1 1 249 +
322637 354623 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 19 AP000657.3 19635 51621 +
354624 404623 20 N 50000 contig no
404624 434057 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 AP000280.3 1 29434 +
434058 434410 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 KF459715.1 1 353 +
434411 434828 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 AP000280.3 29788 30205 +
434829 435200 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 KF511381.1 1 372 +
435201 446799 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 AP000280.3 30577 42175 +
446800 483737 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 AC203640.2 1 36938 +
483738 484105 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 AP000280.3 73320 73687 +
484106 534105 28 N 50000 contig no
534106 535390 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 AP000300.1 1 1285 +
535391 535444 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 KF457222.1 1 54 +
535445 542926 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 AP000300.1 1340 8821 +
542927 543288 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 KF510547.1 1 362 +
543289 588874 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 AP000300.1 9185 54770 +
588875 628497 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 AC207981.3 1 39623 -
628498 651441 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 AP000302.1 12179 35122 +
651442 701441 36 N 50000 contig no
701442 715138 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 AP001475.1 1 13697 +
715139 743225 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 AC226155.3 9736 37822 +
743226 784612 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 AP001468.1 25946 67332 +
784613 834612 40 N 50000 contig no
834613 849881 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 49 AP000432.4 1 15269 +
849882 850271 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 49 KF457038.1 1 390 -
850272 851790 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 49 AP000432.4 15660 17178 +
851791 852340 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 49 KC877791.1 1 550 -
852341 923050 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 49 AP000432.4 17729 88438 +
923051 923350 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 49 KC877788.1 1 300 -
923351 941180 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 49 AP000432.4 88739 106568 +
941181 976401 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 49 AC208585.5 1 35221 -
976402 979978 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 49 AP000432.4 138256 141832 +
979979 1029978 50 N 50000 contig no
1029979 1045647 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 AP000457.3 1 15669 +
1045648 1045977 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 KF457030.1 1 330 +
1045978 1096339 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 AP000457.3 16000 66361 +
1096340 1096719 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 KF457028.1 1 380 +
1096720 1104477 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 AP000457.3 66742 74499 +
1104478 1141878 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 AC226180.3 1 37401 -
1141879 1152397 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 AP000457.3 108699 119217 +
1152398 1152795 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 KF510489.1 1 398 +
1152796 1153161 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 AP000457.3 119617 119982 +
1153162 1153752 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 KC877783.1 1 591 +
1153753 1166288 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 AP000457.3 120574 133109 +
1166289 1166652 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 KC877795.1 1 364 -
1166653 1198400 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 63 AP000457.3 133474 165221 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
6
Gap types
type-3
6
Total clones
35
Clone HTGS Phases
finished
35
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
88,986
Total finished length of fin clones w/ overlap
1,109,540
Total finished length of fin clones w/o overlap
1,020,554
Total overlap length of fin+unfin clones
88,986
Total finished length of fin+unfin clones w/ overlap
1,109,540
Total finished length of fin+unfin clones w/o overlap
1,020,554

Dovetails

# rank accession status length date
1 1 AF130247.2 unfinished 61,036 Sat, 25 Apr 2015 23:43
2 5 AP000705.2 unfinished 117,987 Sat, 25 Apr 2015 23:43
3 11 AP000657.3 unfinished 31,987 Sat, 25 Apr 2015 23:43
4 14 AP000280.3 unfinished 43,900 Sat, 25 Apr 2015 23:43
5 19 AP000300.1 unfinished 54,849 Sat, 25 Apr 2015 23:43
6 29 AP000432.4 unfinished 126,173 Sat, 25 Apr 2015 23:43
7 35 AP000457.3 unfinished 149,222 Sat, 25 Apr 2015 23:43

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Other links

* quick link - http://q.sanger.ac.uk/oa7ju76d