ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__3 (TPF updated: 2015-07-04)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 RP11-454C18
HSCHR3_1_CTG2_1
CONTAINER
bA454C18
AC069067.17
finished
2 ABC9-43900100F20
HSCHR3_1_CTG2_1
CONTAINED
f9A43900100F20
AC204971.4
finished
1 RP11-454C18
HSCHR3_1_CTG2_1
CONTAINER
bA454C18
AC069067.17
finished
  GAP (type-3) length unknown    
4 RP11-758G22
HSCHR3_1_CTG1
CONTAINER
bA758G22
AC090958.3
finished
5
HSCHR3_1_CTG1
CONTAINED
KF495677
KF495677.1
finished
4 RP11-758G22
HSCHR3_1_CTG1
CONTAINER
bA758G22
AC090958.3
finished
6
HSCHR3_1_CTG1
CONTAINED
KF454944
KF454944.1
finished
4 RP11-758G22
HSCHR3_1_CTG1
CONTAINER
bA758G22
AC090958.3
finished
7
HSCHR3_1_CTG1
CONTAINED
KF457589
KF457589.1
finished
4 RP11-758G22
HSCHR3_1_CTG1
CONTAINER
bA758G22
AC090958.3
finished
8
HSCHR3_1_CTG1
CONTAINED
KF457587
KF457587.1
finished
4 RP11-758G22
HSCHR3_1_CTG1
CONTAINER
bA758G22
AC090958.3
finished
9
HSCHR3_1_CTG1
CONTAINED
KF457585
KF457585.1
finished
4 RP11-758G22
HSCHR3_1_CTG1
CONTAINER
bA758G22
AC090958.3
finished
10 ABC12-49072900L8
HSCHR3_1_CTG1
CONTAINED
f12A49072900L8
AC226154.2
finished
4 RP11-758G22
HSCHR3_1_CTG1
CONTAINER
bA758G22
AC090958.3
finished
  GAP (type-3) length unknown    
12 RP11-23D24
HSCHR3_2_CTG2_1
CONTAINER
bA23D24
AC018452.11
finished
13 PCR_RP11_AC018452_1
HSCHR3_2_CTG2_1
CONTAINED
PCR_RP11_AC018452_1
FJ695204.1
finished
12 RP11-23D24
HSCHR3_2_CTG2_1
CONTAINER
bA23D24
AC018452.11
finished
14 ABC9-46299800F4
HSCHR3_2_CTG2_1
CONTAINED
f9A46299800F4
AC207777.3
finished
12 RP11-23D24
HSCHR3_2_CTG2_1
CONTAINER
bA23D24
AC018452.11
finished
  GAP (type-3) length unknown    
16 RP11-552N17
HSCHR3_3_CTG2_1
bA552N17
AC104470.5
finished
17 ABC13-48715900H22
HSCHR3_3_CTG2_1
f13A48715900H22
AC215697.3
finished
18 RP11-190F16
HSCHR3_3_CTG2_1
bA190F16
AC084016.12
finished
  GAP (type-3) length unknown    
20 RP11-141C7
HSCHR3_1_CTG3
bA141C7
AC233280.2
finished
21 DD0002SPDNU_F17
HSCHR3_1_CTG3
DD0002SPDNU_F17
AC239646.4
finished
22 RP11-171N2
HSCHR3_1_CTG3
bA171N2
AC069513.28
finished
  GAP (type-3) length unknown    
24 GS1-388B5
HSCHR3_4_CTG2_1
CONTAINER
bG388B5
AF186996.5
finished
25
HSCHR3_4_CTG2_1
CONTAINED
KF510838
KF510838.1
finished
24 GS1-388B5
HSCHR3_4_CTG2_1
CONTAINER
bG388B5
AF186996.5
finished
26 ABC14-50191000D4
HSCHR3_4_CTG2_1
f14A50191000D4
AC226348.2
finished
27 RP11-379B18
HSCHR3_4_CTG2_1
bA379B18
AC092902.10
finished
  GAP (type-3) length unknown    
29 RP11-433C9
HSCHR3_5_CTG2_1
CONTAINER
bA433C9
AC128714.15
finished
30 ABC11-49529800E15
HSCHR3_5_CTG2_1
CONTAINED
f11A49529800E15
AC225712.4
finished
29 RP11-433C9
HSCHR3_5_CTG2_1
CONTAINER
bA433C9
AC128714.15
finished
  GAP (type-3) length unknown    
32 RP13-616I3
HSCHR3_2_CTG3
CONTAINER
bB616I3
AC128709.6
finished
33 ABC11-47252600K14
HSCHR3_2_CTG3
CONTAINED
f11A47252600K14
AC231647.2
finished
32 RP13-616I3
HSCHR3_2_CTG3
CONTAINER
bB616I3
AC128709.6
finished
  GAP (type-3) length unknown    
35 RP11-638F19
HSCHR3_3_CTG1
CONTAINER
bA638F19
AC107622.2
finished
36 ABC11-47398500K24
HSCHR3_3_CTG1
CONTAINED
f11A47398500K24
AC242309.1
finished
35 RP11-638F19
HSCHR3_3_CTG1
CONTAINER
bA638F19
AC107622.2
finished
  GAP (type-3) length unknown    
38 RP11-694O4
HSCHR3_9_CTG3
CONTAINER
bA694O4
AC073135.3
finished
39 ABC11-47160900C10
HSCHR3_9_CTG3
CONTAINED
f11A47160900C10
AC240720.1
finished
38 RP11-694O4
HSCHR3_9_CTG3
CONTAINER
bA694O4
AC073135.3
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 58070 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC069067.17 1 58070 +
58071 97272 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC204971.4 1 39202 -
97273 182751 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AC069067.17 86735 172213 +
182752 232751 4 N 50000 contig no
232752 275699 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 AC090958.3 1 42948 +
275700 275759 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 KF495677.1 1 60 +
275760 278216 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 AC090958.3 43009 45465 +
278217 278644 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 KF454944.1 1 428 -
278645 296327 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 AC090958.3 45894 63576 +
296328 296713 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 KF457589.1 1 386 -
296714 327091 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 AC090958.3 63963 94340 +
327092 327412 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 KF457587.1 1 321 -
327413 327478 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 AC090958.3 94662 94727 +
327479 327713 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 KF457585.1 1 235 +
327714 336411 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 AC090958.3 94963 103660 +
336412 373711 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 AC226154.2 1 37300 +
373712 428005 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 17 AC090958.3 139040 193333 +
428006 478005 18 N 50000 contig no
478006 519359 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 23 AC018452.11 1 41354 +
519360 519614 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 23 FJ695204.1 1 255 -
519615 562290 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 23 AC018452.11 41614 84289 +
562291 598838 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 23 AC207777.3 1 36548 -
598839 652701 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 23 AC018452.11 117661 171523 +
652702 702701 24 N 50000 contig no
702702 748614 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AC104470.5 1 45913 +
748615 783792 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AC215697.3 1 35178 +
783793 952948 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AC084016.12 22369 191524 +
952949 1002948 28 N 50000 contig no
1002949 1146531 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AC233280.2 23378 166960 -
1146532 1181533 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AC239646.4 1 35002 +
1181534 1209988 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 AC069513.28 1 28455 -
1209989 1259988 32 N 50000 contig no
1259989 1311723 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 37 AF186996.5 1 51735 +
1311724 1312066 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 37 KF510838.1 1 343 -
1312067 1353167 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 37 AF186996.5 52078 93178 +
1353168 1393099 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 37 AC226348.2 1 39932 +
1393100 1485673 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 37 AC092902.10 31498 124071 +
1485674 1535673 38 N 50000 contig no
1535674 1605217 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC128714.15 1 69544 +
1605218 1644259 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC225712.4 1 39042 -
1644260 1650680 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 41 AC128714.15 103552 109972 +
1650681 1700680 42 N 50000 contig no
1700681 1772543 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 AC128709.6 1 71863 +
1772544 1808137 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 AC231647.2 1 35594 +
1808138 1865113 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 45 AC128709.6 106056 163031 +
1865114 1915113 46 N 50000 contig no
1915114 1980949 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 49 AC107622.2 1 65836 +
1980950 2019900 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 49 AC242309.1 1 38951 +
2019901 2078172 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 49 AC107622.2 100237 158508 +
2078173 2128172 50 N 50000 contig no
2128173 2222051 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 AC073135.3 1 93879 +
2222052 2263401 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 AC240720.1 1 41350 -
2263402 2314581 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 53 AC073135.3 138837 190016 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
9
Gap types
type-3
9
Total clones
30
Clone HTGS Phases
finished
30
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
285,547
Total finished length of fin clones w/ overlap
2,349,026
Total finished length of fin clones w/o overlap
2,063,479
Total overlap length of fin+unfin clones
285,547
Total finished length of fin+unfin clones w/ overlap
2,349,026
Total finished length of fin+unfin clones w/o overlap
2,063,479

Dovetails

# rank accession status length date
1 1 AC069067.17 unfinished 85,479 Fri, 03 Jul 2015 23:35
2 4 AC090958.3 unfinished 150,325 Fri, 03 Jul 2015 23:35
3 12 AC018452.11 unfinished 129,910 Fri, 03 Jul 2015 23:35
4 16 AC104470.5 unfinished 40 Fri, 03 Jul 2015 23:35
5 22 AC069513.28 unfinished 119,200 Fri, 03 Jul 2015 23:35
6 24 AF186996.5 unfinished 45,712 Fri, 03 Jul 2015 23:35
7 29 AC128714.15 unfinished 6,421 Fri, 03 Jul 2015 23:35
8 32 AC128709.6 unfinished 71,863 Fri, 03 Jul 2015 23:35
9 35 AC107622.2 unfinished 58,272 Fri, 03 Jul 2015 23:35
10 38 AC073135.3 unfinished 51,180 Fri, 03 Jul 2015 23:35

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/bhd13hgz