ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__9 (TPF updated: 2014-11-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 ABC24-1789J10
Hschr9_1_ctg1
f24A1789J10
AC238707.3
finished
2 RP11-87M1
Hschr9_1_ctg1
bA87M1
EPN details
AL391872.7
finished
  GAP (type-3) length unknown    
4 ABC9-43844100G15
Hschr9_1_ctg2
f9A43844100G15
AC208386.3
finished
5 RP11-548B3
Hschr9_1_ctg2
bA548B3
EPN details
AL355140.25
finished
  GAP (type-3) length unknown    
7 RP11-195E11
Hschr9_1_ctg3
CONTAINER
bA195E11
EPN details
AL392044.7
finished
8 ABC9-45471900O4
Hschr9_1_ctg3
CONTAINED
f9A45471900O4
AC212493.4
finished
7 RP11-195E11
Hschr9_1_ctg3
CONTAINER
bA195E11
EPN details
AL392044.7
finished
  GAP (type-3) length unknown    
10 RP11-1E11
Hschr9_1_ctg4
CONTAINER
bA1E11
EPN details
AL451142.7
finished
11 ABC11-48023700N18
Hschr9_1_ctg4
CONTAINED
f11A48023700N18
AC215799.3
finished
10 RP11-1E11
Hschr9_1_ctg4
CONTAINER
bA1E11
EPN details
AL451142.7
finished
  GAP (type-3) length unknown    
13 RP11-80H12
Hschr9_1_ctg5
bA80H12
EPN details
AL357935.14
finished
14 RP11-70K10
Hschr9_1_ctg5
bA70K10
EPN details
AL161631.20
finished
15 RP11-35N6
Hschr9_1_ctg5
CONTAINER
bA35N6
EPN details
AL359893.16
finished
16 ABC13-49782600B12
Hschr9_1_ctg5
CONTAINED
f13A49782600B12
AC216089.3
finished
15 RP11-35N6
Hschr9_1_ctg5
CONTAINER
bA35N6
EPN details
AL359893.16
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 39943 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC238707.3 1 39943 -
39944 162988 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL391872.7 52908 175952 +
162989 212988 3 N 50000 contig no
212989 255068 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC208386.3 1 42080 -
255069 284539 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL355140.25 155626 185096 +
284540 334539 6 N 50000 contig no
334540 452041 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AL392044.7 1 117502 +
452042 492583 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AC212493.4 1 40542 +
492584 507825 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AL392044.7 151965 167206 +
507826 557825 10 N 50000 contig no
557826 568761 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL451142.7 1 10936 +
568762 610786 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AC215799.3 1 42025 +
610787 619854 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL451142.7 41864 50931 +
619855 669854 14 N 50000 contig no
669855 836902 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AL357935.14 1 167048 +
836903 956721 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AL161631.20 1 119819 +
956722 1058927 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AL359893.16 2001 104206 +
1058928 1097764 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC216089.3 1 38837 +
1097765 1110936 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AL359893.16 133456 146627 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 ABC24-1789J10
Hschr9_1_ctg1
f24A1789J10
-
-
AC238707.3
finished
39943 ABC24 5' / 5'
1 / 52908
- / 27776
25095
0.39
Identified
2014-11-12
fetch_ncbi...
humpub
 
2 RP11-87M1
Hschr9_1_ctg1
bA87M1
EPN details
Submitted to EMBL
12-JAN-09
AL391872.7
finished
175952 RPCI-11.1        
  GAP (type-3) length unknown                  
4 ABC9-43844100G15
Hschr9_1_ctg2
f9A43844100G15
-
-
AC208386.3
finished
42080 ABC9 5' / 5'
1 / 155626
- / 122684
32926
0.21
Identified
2014-11-12
fetch_ncbi...
humpub
 
5 RP11-548B3
Hschr9_1_ctg2
bA548B3
EPN details
Submitted to EMBL
12-JAN-09
AL355140.25
finished
185096 RPCI-11.2        
  GAP (type-3) length unknown                  
7 RP11-195E11
Hschr9_1_ctg3
CONTAINER
bA195E11
EPN details
Submitted to EMBL
12-JAN-09
AL392044.7
finished
167206 RPCI-11.1 3' / 5'
117502 / 1
15242 / -
40542
18.05
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
8 ABC9-45471900O4
Hschr9_1_ctg3
CONTAINED
f9A45471900O4
-
-
AC212493.4
finished
40542 ABC9 3' / 5'
40542 / 151965
- / 117502
40542
18.05
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
7 RP11-195E11
Hschr9_1_ctg3
CONTAINER
bA195E11
EPN details
Submitted to EMBL
12-JAN-09
AL392044.7
finished
167206 RPCI-11.1        
  GAP (type-3) length unknown                  
10 RP11-1E11
Hschr9_1_ctg4
CONTAINER
bA1E11
EPN details
Submitted to EMBL
12-JAN-09
AL451142.7
finished
50931 RPCI-11.1 3' / 5'
10936 / 1
9068 / -
42025
36.75
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
11 ABC11-48023700N18
Hschr9_1_ctg4
CONTAINED
f11A48023700N18
-
-
AC215799.3
finished
42025 ABC11 3' / 5'
42025 / 41864
- / 10936
42025
36.75
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
10 RP11-1E11
Hschr9_1_ctg4
CONTAINER
bA1E11
EPN details
Submitted to EMBL
12-JAN-09
AL451142.7
finished
50931 RPCI-11.1        
  GAP (type-3) length unknown                  
13 RP11-80H12
Hschr9_1_ctg5
bA80H12
EPN details
Submitted to EMBL
12-JAN-09
AL357935.14
finished
169047 RPCI-11.1 3' / 5'
167048 / 1
- / -
1999
0.3
Commented
2014-11-12
fetch_ncbi...
humpub
 
14 RP11-70K10
Hschr9_1_ctg5
bA70K10
EPN details
Submitted to EMBL
12-JAN-09
AL161631.20
finished
119819 RPCI-11.1 3' / 5'
119819 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
15 RP11-35N6
Hschr9_1_ctg5
CONTAINER
bA35N6
EPN details
Submitted to EMBL
12-JAN-09
AL359893.16
finished
146627 RPCI-11.1 3' / 5'
104206 / 1
13172 / -
38837
33.41
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
16 ABC13-49782600B12
Hschr9_1_ctg5
CONTAINED
f13A49782600B12
-
-
AC216089.3
finished
38837 ABC13 3' / 5'
38837 / 133456
- / 104206
38837
33.41
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
15 RP11-35N6
Hschr9_1_ctg5
CONTAINER
bA35N6
EPN details
Submitted to EMBL
12-JAN-09
AL359893.16
finished
146627 RPCI-11.1        

Statistics

Clone Summary

Number of gaps
4
Gap types
type-3
4
Total clones
12
Clone HTGS Phases
finished
12
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
156,545
Total finished length of fin clones w/ overlap
1,218,105
Total finished length of fin clones w/o overlap
1,061,560
Total overlap length of fin+unfin clones
156,545
Total finished length of fin+unfin clones w/ overlap
1,218,105
Total finished length of fin+unfin clones w/o overlap
1,061,560

Dovetails

# rank accession status length date
1 2 AL391872.7 unfinished 27,776 Sun, 23 Nov 2014 00:03
2 5 AL355140.25 unfinished 122,684 Sun, 23 Nov 2014 00:03
3 7 AL392044.7 unfinished 15,242 Sun, 23 Nov 2014 00:03
4 10 AL451142.7 unfinished 9,068 Sun, 23 Nov 2014 00:03
5 15 AL359893.16 unfinished 13,172 Sun, 23 Nov 2014 00:03

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Other links

* quick link - http://q.sanger.ac.uk/s12gyyrn