ChromoView - clone / Assembly sequencing status

Human: Sub region GRC__HUMAN__ALT_REF_LOCI_1__9 (TPF updated: 2015-07-03)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 ABC24-1789J10
Hschr9_1_ctg1
f24A1789J10
AC238707.3
finished
2 RP11-87M1
Hschr9_1_ctg1
bA87M1
AL391872.7
finished
  GAP (type-3) length unknown    
4 ABC9-43844100G15
Hschr9_1_ctg2
f9A43844100G15
AC208386.3
finished
5 RP11-548B3
Hschr9_1_ctg2
bA548B3
AL355140.25
finished
  GAP (type-3) length unknown    
7 RP11-195E11
Hschr9_1_ctg3
CONTAINER
bA195E11
AL392044.7
finished
8 ABC9-45471900O4
Hschr9_1_ctg3
CONTAINED
f9A45471900O4
AC212493.4
finished
7 RP11-195E11
Hschr9_1_ctg3
CONTAINER
bA195E11
AL392044.7
finished
  GAP (type-3) length unknown    
10 RP11-1E11
Hschr9_1_ctg4
CONTAINER
bA1E11
AL451142.7
finished
11 ABC11-48023700N18
Hschr9_1_ctg4
CONTAINED
f11A48023700N18
AC215799.3
finished
10 RP11-1E11
Hschr9_1_ctg4
CONTAINER
bA1E11
AL451142.7
finished
  GAP (type-3) length unknown    
13 RP11-80H12
Hschr9_1_ctg5
bA80H12
AL357935.14
finished
14 RP11-70K10
Hschr9_1_ctg5
bA70K10
AL161631.20
finished
15 RP11-35N6
Hschr9_1_ctg5
CONTAINER
bA35N6
AL359893.16
finished
16 ABC13-49782600B12
Hschr9_1_ctg5
CONTAINED
f13A49782600B12
AC216089.3
finished
15 RP11-35N6
Hschr9_1_ctg5
CONTAINER
bA35N6
AL359893.16
finished
  GAP (type-3) length unknown    
18 RP11-338L20
Hschr9_1_ctg6
CONTAINER
bA338L20
AL353638.15
finished
19 ABC24-724O23
Hschr9_1_ctg6
CONTAINED
f24A724O23
AC245202.1
finished
18 RP11-338L20
Hschr9_1_ctg6
CONTAINER
bA338L20
AL353638.15
finished
  GAP (type-3) length unknown    
21 RP11-468C2
Hschr9_1_ctg7
CONTAINER
bA468C2
AL355975.10
finished
22 ABC10-45505500C8
Hschr9_1_ctg7
CONTAINED
f10A45505500C8
AC203630.3
finished
21 RP11-468C2
Hschr9_1_ctg7
CONTAINER
bA468C2
AL355975.10
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 39943 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC238707.3 1 39943 -
39944 162988 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL391872.7 52908 175952 +
162989 212988 3 N 50000 contig no
212989 255068 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC208386.3 1 42080 -
255069 284539 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL355140.25 155626 185096 +
284540 334539 6 N 50000 contig no
334540 452041 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AL392044.7 1 117502 +
452042 492583 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AC212493.4 1 40542 +
492584 507825 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 9 AL392044.7 151965 167206 +
507826 557825 10 N 50000 contig no
557826 568761 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL451142.7 1 10936 +
568762 610786 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AC215799.3 1 42025 +
610787 619854 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL451142.7 41864 50931 +
619855 669854 14 N 50000 contig no
669855 836902 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AL357935.14 1 167048 +
836903 956721 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AL161631.20 1 119819 +
956722 1058927 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AL359893.16 2001 104206 +
1058928 1097764 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AC216089.3 1 38837 +
1097765 1110936 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 19 AL359893.16 133456 146627 +
1110937 1160936 20 N 50000 contig no
1160937 1172305 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 AL353638.15 1 11369 +
1172306 1210051 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 AC245202.1 1 37746 +
1210052 1326818 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 AL353638.15 44301 161067 +
1326819 1376818 24 N 50000 contig no
1376819 1398188 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AL355975.10 1 21370 +
1398189 1437128 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AC203630.3 1 38940 -
1437129 1512917 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 27 AL355975.10 55917 131705 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
6
Gap types
type-3
6
Total clones
16
Clone HTGS Phases
finished
16
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
416,578
Total finished length of fin clones w/ overlap
1,587,563
Total finished length of fin clones w/o overlap
1,170,985
Total overlap length of fin+unfin clones
416,578
Total finished length of fin+unfin clones w/ overlap
1,587,563
Total finished length of fin+unfin clones w/o overlap
1,170,985

Dovetails

# rank accession status length date
1 2 AL391872.7 unfinished 27,776 Thu, 02 Jul 2015 23:56
2 5 AL355140.25 unfinished 122,684 Thu, 02 Jul 2015 23:56
3 7 AL392044.7 unfinished 15,242 Thu, 02 Jul 2015 23:56
4 10 AL451142.7 unfinished 9,068 Thu, 02 Jul 2015 23:56
5 15 AL359893.16 unfinished 13,172 Thu, 02 Jul 2015 23:56

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Other links

* quick link - http://q.sanger.ac.uk/s12gyyrn