I am mostly involved in writing software for assembly, alignment and finishing.
I mostly work in C, C++, Perl and a little Tcl/Tk. I have programmed (professionally and otherwise) in Java, Python and PHP. Occasionally I will mess around with databases but only if I have to.
Gap5--editing the billion fragment sequence assembly.
Bioinformatics (Oxford, England) 2010;26;14;1699-703
Intra- and interhost evolutionary dynamics of equine influenza virus.
Journal of virology 2010;84;14;6943-54