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Mammalian Phenotype
Chromosome
Marker Symbol

Browsing Data by Marker Symbol: 'V'

Vamp7

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Vamp7 was found for the following reasons:
synonym - VAMP-7
marker_name - vesicle-associated membrane protein 7
symbol - Vamp7
marker_symbol_str - Vamp7
marker_symbol - Vamp7

Gene Details

Marker Name(s): vesicle-associated membrane protein 7
view this gene in MGI
Marker Type: protein coding gene
Synonyms: Sybl1, VAMP-7
Location: ChrX
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1096399 Ensembl Gene ID: Vega Gene ID:
Entrez Gene ID: 20955 CCDS ID:
Interpro Families
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human VAMP7 6845
Rat Vamp7 85491

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

Vamp7-ps

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Vamp7-ps was found for the following reasons:
marker_name - vesicle-associated membrane protein 7, pseudogene
symbol - Vamp7-ps
marker_symbol_str - Vamp7-ps
marker_symbol - Vamp7-ps

Gene Details

Marker Name(s): vesicle-associated membrane protein 7, pseudogene
view this gene in MGI
Marker Type: pseudogene
Synonyms: Gm14338, OTTMUSG00000016374, Sybl1-ps
Location: Chr2:174046619-174047273(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:3652239 Ensembl Gene ID: ENSMUSG00000082519 Vega Gene ID: OTTMUSG00000016374
Entrez Gene ID: 664901 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

Vamp8

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Vamp8 was found for the following reasons:
ikmc_project_product_status - EUCOMM Vector Generated
marker_name - vesicle-associated membrane protein 8
product_status_str - Vector Generated
symbol - Vamp8
targeting_vector - VG19065
marker_symbol_str - Vamp8
marker_symbol - Vamp8
ikmc_targ_rep_allele_id - VG19065||39373
product_status - Vector Generated
allele - tm1(KOMP)Vlcg
ikmc_project_id - VG19065

Gene Details no data available

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
27 6 0 0 view in Ensembl

Vangl1

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Vangl1 was found for the following reasons:
ikmc_project_product_status - KOMP-CSD Vector Generated
sanger_phenotype - viability_at_weaning
marker_name - vang-like 1 (van gogh, Drosophila)
product_status_str - Vector Generated
symbol - Vangl1
phenotype - viability_at_weaning
marker_symbol_str - Vangl1
marker_symbol - Vangl1
ma_term - visceral organ system
product_status - Vector Generated
mp_ontology - vision/eye phenotype | abnormal eye morphology | abnormal anterior eye segment morphology
ma_ontology - anatomical structure | postnatal mouse | anatomic region | organ system | trunk | visceral organ
mp_term - vision/eye phenotype

Gene Details no data available

WTSI Phenotyping

MP Ontology Based Heatmap
Allele Name Colony Prefix Colony Strain adipose tissue behavior/neurological cardiovascular system cellular craniofacial digestive/alimentary embryogenesis endocrine/exocrine gland growth/size hearing/vestibular/ear hematopoietic system homeostasis/metabolism immune system integument limbs/digits/tail liver/biliary system mortality/aging muscle nervous system other pigmentation renal/urinary system reproductive system respiratory system skeleton taste/olfaction tumorigenesis vision/eye
Vangl1tm1e(KOMP)Wtsi MCEC view view view view view view view view view view view view view view view view view view view
Legend: No Raw Data No Significant Annotations Significant Annotation Present Link to a Test Report Page Link to a test report page
About This Heatmap

This heatmap is built up of top-level terms from the MP (Mammalian Phenotype) ontology. We have mapped a majority of the parameters in our tests to appropriate MP terms, so when we perform a given test we can say if it should be annotated with the given MP term (if the phenotype is significant). This is what you see in this heatmap - if a significant result has been annotated to a top-level MP term (or any of its children), the cell will be red, if the result was not significant, the cell will be blue.

Please Note: as mentioned above we do not annotate all of our phenotyping tests to the MP ontology. The tests that are excluded are: 'Adult LacZ Expression', 'Brain/Eye/Skin Histopathology', 'Embryo LacZ Expression', 'Fertility', 'Heart Histology', 'Micronuclei', 'MicroCT & Quantitative Faxitron', 'Plasma Immunoglobulins', 'Prepulse Inhibition', 'Recessive Lethal Study', 'Tail Epidermis Wholemount', 'Tissue Biobank' and 'Viability at Weaning'. You can find our results for these tests in the 'Phenotyping Test Based Heatmap' below.

Phenotyping Test Based Heatmap
Allele Name Colony Prefix Colony Strain Viability at weaning Recessive Lethal Study Fertility Embryo LacZ Expression Adult LacZ Expression General Observations Weight Curves Open Field Modified SHIRPA Grip Strength Hot Plate Dysmorphology Rotarod Non-Invasive Blood Pressure Prepulse Inhibition Indirect Calorimetry Glucose Tolerance (ip) Auditory Brainstem Response Body Composition (DEXA) X-ray Imaging Stress Induced Hyperthermia Eye Morphology Plasma Chemistry Plasma Immunoglobulins Haematology (CBC) Peripheral Blood Lymphocytes Micronuclei Tissue Biobank Heart Weight Heart Histology Tail Epidermis Wholemount Skin Histopathology Brain Histopathology Eye Histopathology MicroCT & Quantitative Faxitron Salmonella Challenge Citrobacter Challenge
Vangl1tm1e(KOMP)Wtsi MCEC view view view view view view view view view view view view view view view view view view view view view view view view view pdf view view
download a spreadsheet containing all WTSI phenotyping data
Legend - hover over each heading to get a more complete description
Test complete and data/resources are available Test is complete and the data are considered interesting Preliminary indication of an interesting phenotype
Test is complete but the data are not considered interesting Test not performed or applicable Test pending
Test abandoned Link to a Test Report Page Link to a test report page Link to a PDF Report Link to a pdf report

IKMC Vectors and ES Cells no data available

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
17 4 3 0 view in Ensembl

Vangl2

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Vangl2 was found for the following reasons:
ikmc_project_product_status - EUCOMM Vector Generated
marker_name - vang-like 2 (van gogh, Drosophila)
product_status_str - Vector Generated
symbol - Vangl2
marker_symbol_str - Vangl2
marker_symbol - Vangl2
product_status - Vector Generated
ikmc_project_id - VG14324

Gene Details no data available

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
31 5 1 0 view in Ensembl

Vapa

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Vapa was found for the following reasons:
synonym - VAP33
ikmc_project_product_status - EUCOMM Vector Generated
marker_name - vesicle-associated membrane protein, associated protein A
product_status_str - Vector Generated
symbol - Vapa
interpro_desc - Vesicle-associated_membrane
marker_symbol_str - Vapa
marker_symbol - Vapa
product_status - Vector Generated
ikmc_project_id - VG14922
interpro - IPR016763||Vesicle-associated_membrane||Vesicle-associated membrane protein

Gene Details no data available

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
27 12 5 0 view in Ensembl

Vapb

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Vapb was found for the following reasons:
synonym - VAMP-associated protein 33b
ikmc_project_product_status - EUCOMM Vector Generated
marker_name - vesicle-associated membrane protein, associated protein B and C
product_status_str - Vector Generated
symbol - Vapb
interpro_desc - Vesicle-associated_membrane
marker_symbol_str - Vapb
marker_symbol - Vapb
product_status - Vector Generated
interpro - IPR016763||Vesicle-associated_membrane||Vesicle-associated membrane protein

Gene Details no data available

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
31 9 2 0 view in Ensembl

Vars

Vars was found for the following reasons:
synonym - Vars2
ikmc_project_product_status - EUCOMM Vector Generated
marker_name - valyl-tRNA synthetase
product_status_str - Vector Generated
symbol - Vars
interpro_desc - Val/Leu/Ile-tRNA-synth_edit
marker_symbol_str - Vars
marker_symbol - Vars
product_status - Vector Generated
ikmc_project_id - VG17704
interpro - IPR009008||Val/LeuVal/Leu/Ile-tRNA-synth_edit||Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain

Gene Details

Marker Name(s): valyl-tRNA synthetase
view this gene in MGI
Marker Type: protein coding gene
Synonyms: Bat-6, Bat6, D17H6S56E, G7a, Vars2
Location: Chr17:35000987-35016322(+)
Related Human Conditions (from OMIM) - no related Human Condition

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells

Vectors ES Cells
EUCOMM
(Project: 30349)
order order view details

ES Cell Clones

Cassette Type 7 Knockout-First Alleles 2 Targeted Non-Conditional Alleles
Promotor Driven
Allele: genbank file | image
Targeting Vector: genbank file | image
Allele: genbank file | image
Targeting Vector: genbank file | image
ES Cell Clones With Conditional Potential
ES Cell Clone Targeting Vector ES Cell Strain ES Cell Line Allele Allele Type QC/Screening Data
HEPD0564_4_C04 PRPGS00099_A_F09 C57BL/6N-Atm1Brd/a JM8A1.N3 tm1a(EUCOMM)Hmgu Knockout First, Reporter-tagged insertion with conditional potential (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP pass LACZ pass
Chromosome 1 - Chromosome 8a fail Chromosome 8b -
Chromosome 11a pass Chromosome 11b - Chromosome Y pass
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
HEPD0564_4_D02 PRPGS00099_A_F09 C57BL/6N-Atm1Brd/a JM8A1.N3 tm1a(EUCOMM)Hmgu Knockout First, Reporter-tagged insertion with conditional potential (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR fail 5' SR-PCR pass 3' SR-PCR -
LOA - LOXP pass LACZ pass
Chromosome 1 - Chromosome 8a pass Chromosome 8b -
Chromosome 11a pass Chromosome 11b - Chromosome Y pass
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
HEPD0564_4_D04 PRPGS00099_A_F09 C57BL/6N-Atm1Brd/a JM8A1.N3 tm1a(EUCOMM)Hmgu Knockout First, Reporter-tagged insertion with conditional potential (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR pass 5' SR-PCR pass 3' SR-PCR -
LOA - LOXP pass LACZ pass
Chromosome 1 - Chromosome 8a pass Chromosome 8b -
Chromosome 11a pass Chromosome 11b - Chromosome Y pass
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
HEPD0564_4_E03 PRPGS00099_A_F09 C57BL/6N-Atm1Brd/a JM8A1.N3 tm1a(EUCOMM)Hmgu Knockout First, Reporter-tagged insertion with conditional potential (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR pass 3' SR-PCR -
LOA - LOXP pass LACZ pass
Chromosome 1 - Chromosome 8a fail Chromosome 8b -
Chromosome 11a pass Chromosome 11b - Chromosome Y fail
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
HEPD0564_4_F01 PRPGS00099_A_F09 C57BL/6N-Atm1Brd/a JM8A1.N3 tm1a(EUCOMM)Hmgu Knockout First, Reporter-tagged insertion with conditional potential (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR fail 5' SR-PCR pass 3' SR-PCR -
LOA - LOXP pass LACZ pass
Chromosome 1 - Chromosome 8a pass Chromosome 8b -
Chromosome 11a pass Chromosome 11b - Chromosome Y pass
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
HEPD0564_4_F03 PRPGS00099_A_F09 C57BL/6N-Atm1Brd/a JM8A1.N3 tm1a(EUCOMM)Hmgu Knockout First, Reporter-tagged insertion with conditional potential (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
HEPD0564_4_G02 PRPGS00099_A_F09 C57BL/6N-Atm1Brd/a JM8A1.N3 tm1a(EUCOMM)Hmgu Knockout First, Reporter-tagged insertion with conditional potential (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR fail 5' SR-PCR pass 3' SR-PCR -
LOA - LOXP pass LACZ pass
Chromosome 1 - Chromosome 8a pass Chromosome 8b -
Chromosome 11a pass Chromosome 11b - Chromosome Y pass
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
ES Cell Clones Without Conditional Potential
ES Cell Clone Targeting Vector ES Cell Strain ES Cell Line Allele Allele Type QC/Screening Data
HEPD0564_4_A04 PRPGS00099_A_F09 C57BL/6N-Atm1Brd/a JM8A1.N3 tm1e(EUCOMM)Hmgu Targeted Non-Conditional (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen not confirmed 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
HEPD0564_4_E02 PRPGS00099_A_F09 C57BL/6N-Atm1Brd/a JM8A1.N3 tm1e(EUCOMM)Hmgu Targeted Non-Conditional (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen not confirmed 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -

Targeting Vectors

Design Targeting Vector Intermediate Vector Cassette Backbone Targeting Vector Genbank File
82055 PRPGS00099_A_F09 PCTS00099_A_F09 L1L2_Bact_P R3R4_pBR_DTA+_Bsd_amp view
82055 PRPGS00099_A_F09 PCTS00099_A_F09 L1L2_Bact_P R3R4_pBR_DTA+_Bsd_amp view
Vectors ES Cells
KOMP-Regeneron
Parental BAC Obtained Projects: VG17704

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
28 13 0 2 view in Ensembl

Vars2

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Vars2 was found for the following reasons:
synonym - Vars2l
ikmc_project_product_status - KOMP-CSD Vector Generated
marker_name - valyl-tRNA synthetase 2, mitochondrial (putative)
product_status_str - Vector Generated
symbol - Vars2
interpro_desc - Val/Leu/Ile-tRNA-synth_edit
marker_symbol_str - Vars2
marker_symbol - Vars2
product_status - Vector Generated
interpro - IPR009008||Val/LeuVal/Leu/Ile-tRNA-synth_edit||Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain

Gene Details no data available

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
31 13 6 0 view in Ensembl

Vash1

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Vash1 was found for the following reasons:
ikmc_project_product_status - KOMP-CSD Vector Generated
marker_name - vasohibin 1
product_status_str - Vector Generated
symbol - Vash1
targeting_vector - VG15083
marker_symbol_str - Vash1
marker_symbol - Vash1
ikmc_targ_rep_allele_id - VG15083||29786
product_status - Vector Generated
allele - tm1(KOMP)Vlcg
ikmc_project_id - VG15083

Gene Details no data available

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
26 4 1 0 view in Ensembl