Available Products
Mammalian Phenotype
Chromosome
Marker Symbol

Browsing Data by Chromosome: '9'

Pcbp4

Pcbp4 was found for the following reasons:
chromosome - 9
ikmc_project_id - IST11124E9

Gene Details

Marker Name(s): poly(rC) binding protein 4
view this gene in MGI
Marker Type: protein coding gene
Synonyms: 1200003L19Rik, AlphaCP-4
Location: Chr9:106453291-106464012(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1890471 Ensembl Gene ID: ENSMUSG00000023495 Vega Gene ID: OTTMUSG00000049661
Entrez Gene ID: 59092 CCDS ID:
Interpro Families
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human PCBP4 57060
Rat Pcbp4 363133

WTSI Phenotyping no data available

Mice

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IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
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DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
26 5 1 0 view in Ensembl

Pccb

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Pccb was found for the following reasons:
chromosome - 9

Gene Details no data available

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
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          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
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DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
18 6 3 0 view in Ensembl

Pchr

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Pchr was found for the following reasons:
chromosome - 9

Gene Details

Marker Name(s): Plasmodium chaubaudi resistance
view this gene in MGI
Marker Type: heritable phenotypic marker
Synonyms:
Location: Chr9
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:102624 Ensembl Gene ID: Vega Gene ID:
Entrez Gene ID: 107436 CCDS ID:

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
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    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
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DNA Clone Resources no data available

Pcolce2

Pcolce2 was found for the following reasons:
chromosome - 9

Gene Details

Marker Name(s): procollagen C-endopeptidase enhancer 2
view this gene in MGI
Marker Type: protein coding gene
Synonyms: 2400001O18Rik, Pcpe2
Location: Chr9:95637601-95698096(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1923727 Ensembl Gene ID: ENSMUSG00000015354 Vega Gene ID: OTTMUSG00000030790
Entrez Gene ID: 76477 CCDS ID:
Interpro Families
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human PCOLCE2 26577
Rat PCOLCE2 684050

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
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          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
28 5 1 0 view in Ensembl

Pcsk7

Pcsk7 was found for the following reasons:
chromosome - 9

Gene Details

Marker Name(s): proprotein convertase subtilisin/kexin type 7
view this gene in MGI
Marker Type: protein coding gene
Synonyms: AA959856, SPC7
Location: Chr9:45906569-45929692(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:107421 Ensembl Gene ID: ENSMUSG00000035382 Vega Gene ID:
Entrez Gene ID: 18554 CCDS ID:

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
15 4 0 0 view in Ensembl

Pdcd6ip

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Pdcd6ip was found for the following reasons:
chromosome - 9

Gene Details no data available

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
26 5 1 2 view in Ensembl

Pdcd7

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Pdcd7 was found for the following reasons:
chromosome - 9

Gene Details no data available

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
18 8 0 2 view in Ensembl

Pde4a

Pde4a was found for the following reasons:
synonym - D9Ertd60e
chromosome - 9

Gene Details

Marker Name(s): phosphodiesterase 4A, cAMP specific
view this gene in MGI
Marker Type: protein coding gene
Synonyms: D9Ertd60e, Dpde2, dunce
Location: Chr9:21165714-21213248(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:99558 Ensembl Gene ID: ENSMUSG00000032177 Vega Gene ID: OTTMUSG00000034143
Entrez Gene ID: 18577 CCDS ID:
Interpro Families
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human PDE4A 5141
Rat Pde4a 25638

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
41 9 1 0 view in Ensembl

Pdgfd

Pdgfd was found for the following reasons:
chromosome - 9

Gene Details

Marker Name(s): platelet-derived growth factor, D polypeptide
view this gene in MGI
Marker Type: protein coding gene
Synonyms: 1110003I09Rik
Location: Chr9:6168612-6377519(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1919035 Ensembl Gene ID: ENSMUSG00000032006 Vega Gene ID:
Entrez Gene ID: 71785 CCDS ID:
Interpro Families
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human PDGFD 80310
Rat Pdgfd 66018

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
46 8 11 0 view in Ensembl

Pdzd3

Pdzd3 was found for the following reasons:
chromosome - 9

Gene Details

Marker Name(s): PDZ domain containing 3
view this gene in MGI
Marker Type: protein coding gene
Synonyms: NaPi-Cap2, Pdzk2, sodium-phosphate cotransporter IIa C-terminal-associated protein 2
Location: Chr9:44247312-44251464(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:2429554 Ensembl Gene ID: ENSMUSG00000032105 Vega Gene ID:
Entrez Gene ID: 170761 CCDS ID:
Interpro Families
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human PDZD3 79849
Rat Pdzd3 500986

WTSI Phenotyping

MP Ontology Based Heatmap
Allele Name Colony Prefix Colony Strain adipose tissue behavior/neurological cardiovascular system cellular craniofacial digestive/alimentary embryogenesis endocrine/exocrine gland growth/size hearing/vestibular/ear hematopoietic system homeostasis/metabolism immune system integument limbs/digits/tail liver/biliary system mortality/aging muscle nervous system other pigmentation renal/urinary system reproductive system respiratory system skeleton taste/olfaction tumorigenesis vision/eye
Pdzd3 METD view view view view view view view view view view view view view view view view view view
Legend: No Raw Data No Significant Annotations Significant Annotation Present Link to a Test Report Page Link to a test report page
About This Heatmap

This heatmap is built up of top-level terms from the MP (Mammalian Phenotype) ontology. We have mapped a majority of the parameters in our tests to appropriate MP terms, so when we perform a given test we can say if it should be annotated with the given MP term (if the phenotype is significant). This is what you see in this heatmap - if a significant result has been annotated to a top-level MP term (or any of its children), the cell will be red, if the result was not significant, the cell will be blue.

Please Note: as mentioned above we do not annotate all of our phenotyping tests to the MP ontology. The tests that are excluded are: 'Adult LacZ Expression', 'Brain/Eye/Skin Histopathology', 'Embryo LacZ Expression', 'Fertility', 'Heart Histology', 'Micronuclei', 'MicroCT & Quantitative Faxitron', 'Plasma Immunoglobulins', 'Prepulse Inhibition', 'Recessive Lethal Study', 'Tail Epidermis Wholemount', 'Tissue Biobank' and 'Viability at Weaning'. You can find our results for these tests in the 'Phenotyping Test Based Heatmap' below.

Phenotyping Test Based Heatmap
Allele Name Colony Prefix Colony Strain Viability at weaning Recessive Lethal Study Fertility Embryo LacZ Expression Adult LacZ Expression General Observations Weight Curves Open Field Modified SHIRPA Grip Strength Hot Plate Dysmorphology Rotarod Non-Invasive Blood Pressure Prepulse Inhibition Indirect Calorimetry Glucose Tolerance (ip) Auditory Brainstem Response Body Composition (DEXA) X-ray Imaging Stress Induced Hyperthermia Eye Morphology Plasma Chemistry Plasma Immunoglobulins Haematology (CBC) Peripheral Blood Lymphocytes Micronuclei Tissue Biobank Heart Weight Heart Histology Tail Epidermis Wholemount Skin Histopathology Brain Histopathology Eye Histopathology MicroCT & Quantitative Faxitron Salmonella Challenge Citrobacter Challenge
Pdzd3 METD view view view view view view view view view view view view view view view view view view
download a spreadsheet containing all WTSI phenotyping data
Legend - hover over each heading to get a more complete description
Test complete and data/resources are available Test is complete and the data are considered interesting Preliminary indication of an interesting phenotype
Test is complete but the data are not considered interesting Test not performed or applicable Test pending
Test abandoned Link to a Test Report Page Link to a test report page Link to a PDF Report Link to a pdf report

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
15 2 0 0 view in Ensembl