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Mammalian Phenotype
Chromosome
Marker Symbol

Browsing Data by Chromosome: '2'

Rpl9-ps7

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Rpl9-ps7 was found for the following reasons:
chromosome - 2

Gene Details

Marker Name(s): ribosomal protein L9, pseudogene 7
view this gene in MGI
Marker Type: pseudogene
Synonyms: ENSMUSG00000047965, Gm9822
Location: Chr2:70458982-70459560(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:3642824 Ensembl Gene ID: ENSMUSG00000047965 Vega Gene ID: OTTMUSG00000033268
Entrez Gene ID: 100040021 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

Rpn2

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Rpn2 was found for the following reasons:
synonym - Rpn-2
chromosome - 2
targeting_vector - PG00023_C_2_F07

Gene Details no data available

WTSI Phenotyping

MP Ontology Based Heatmap
Allele Name Colony Prefix Colony Strain adipose tissue behavior/neurological cardiovascular system cellular craniofacial digestive/alimentary embryogenesis endocrine/exocrine gland growth/size hearing/vestibular/ear hematopoietic system homeostasis/metabolism immune system integument limbs/digits/tail liver/biliary system mortality/aging muscle nervous system other pigmentation renal/urinary system reproductive system respiratory system skeleton taste/olfaction tumorigenesis vision/eye
Rpn2tm1a(EUCOMM)Wtsi MBEJ view view view view view view view view view view view view view view view view view view view view
Legend: No Raw Data No Significant Annotations Significant Annotation Present Link to a Test Report Page Link to a test report page
About This Heatmap

This heatmap is built up of top-level terms from the MP (Mammalian Phenotype) ontology. We have mapped a majority of the parameters in our tests to appropriate MP terms, so when we perform a given test we can say if it should be annotated with the given MP term (if the phenotype is significant). This is what you see in this heatmap - if a significant result has been annotated to a top-level MP term (or any of its children), the cell will be red, if the result was not significant, the cell will be blue.

Please Note: as mentioned above we do not annotate all of our phenotyping tests to the MP ontology. The tests that are excluded are: 'Adult LacZ Expression', 'Brain/Eye/Skin Histopathology', 'Embryo LacZ Expression', 'Fertility', 'Heart Histology', 'Micronuclei', 'MicroCT & Quantitative Faxitron', 'Plasma Immunoglobulins', 'Prepulse Inhibition', 'Recessive Lethal Study', 'Tail Epidermis Wholemount', 'Tissue Biobank' and 'Viability at Weaning'. You can find our results for these tests in the 'Phenotyping Test Based Heatmap' below.

Phenotyping Test Based Heatmap
Allele Name Colony Prefix Colony Strain Viability at weaning Recessive Lethal Study Fertility Embryo LacZ Expression Adult LacZ Expression General Observations Weight Curves Open Field Modified SHIRPA Grip Strength Hot Plate Dysmorphology Rotarod Non-Invasive Blood Pressure Prepulse Inhibition Indirect Calorimetry Glucose Tolerance (ip) Auditory Brainstem Response Body Composition (DEXA) X-ray Imaging Stress Induced Hyperthermia Eye Morphology Plasma Chemistry Plasma Immunoglobulins Haematology (CBC) Peripheral Blood Lymphocytes Micronuclei Tissue Biobank Heart Weight Heart Histology Tail Epidermis Wholemount Skin Histopathology Brain Histopathology Eye Histopathology MicroCT & Quantitative Faxitron Salmonella Challenge Citrobacter Challenge
Rpn2tm1a(EUCOMM)Wtsi MBEJ view view view view view view view view view view view view view view view view view view view view view view view view view view view pdf view view
download a spreadsheet containing all WTSI phenotyping data
Legend - hover over each heading to get a more complete description
Test complete and data/resources are available Test is complete and the data are considered interesting Preliminary indication of an interesting phenotype
Test is complete but the data are not considered interesting Test not performed or applicable Test pending
Test abandoned Link to a Test Report Page Link to a test report page Link to a PDF Report Link to a pdf report

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

Rpp38

Rpp38 was found for the following reasons:
chromosome - 2
targeting_vector - PG00168_Z_2_A02

Gene Details

Marker Name(s): ribonuclease P/MRP 38 subunit
view this gene in MGI
Marker Type: protein coding gene
Synonyms: C330006A15Rik
Location: Chr2:3328949-3332643(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:2443607 Ensembl Gene ID: ENSMUSG00000049950 Vega Gene ID: OTTMUSG00000010784
Entrez Gene ID: 227522 CCDS ID:
Interpro Families
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human RPP38 10557
Rat Rpp38 291317

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells

Vectors ES Cells
KOMP-CSD
(Project: 28083)
order order view details

ES Cell Clones

Cassette Type 0 Knockout-First Alleles 4 Targeted Non-Conditional Alleles
Promotor Driven
Targeting Vector: genbank file | image
Allele: genbank file | image
Targeting Vector: genbank file | image
ES Cell Clones With Conditional Potential

No clones available.

ES Cell Clones Without Conditional Potential
ES Cell Clone Targeting Vector ES Cell Strain ES Cell Line Allele Allele Type QC/Screening Data
EPD0405_5_B02 DPGS00168_A_A02 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1(KOMP)Wtsi Reporter-Tagged Deletion (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen not confirmed 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
EPD0405_5_C02 DPGS00168_A_A02 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1(KOMP)Wtsi Reporter-Tagged Deletion (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen not confirmed 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
EPD0405_5_C03 DPGS00168_A_A02 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1(KOMP)Wtsi Reporter-Tagged Deletion (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen not confirmed 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
EPD0405_5_F02 DPGS00168_A_A02 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1(KOMP)Wtsi Reporter-Tagged Deletion (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen not confirmed 3' Screen pass
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -

Targeting Vectors

Design Targeting Vector Intermediate Vector Cassette Backbone Targeting Vector Genbank File
232088 DPGS00168_A_A02 PCS00168_A_A02 L1L2_Bact_P R3R4_pBR_DTA+_Bsd_amp view
Vectors ES Cells
EUCOMM
Design Completed Projects: 117839

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
26 3 0 1 view in Ensembl

Rprd1b

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Rprd1b was found for the following reasons:
chromosome - 2
targeting_vector - PG00137_Y_2_F11

Gene Details no data available

WTSI Phenotyping no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

Rprm

Rprm was found for the following reasons:
chromosome - 2
marker_name - reprimo, TP53 dependent G2 arrest mediator candidate

Gene Details

Marker Name(s): reprimo, TP53 dependent G2 arrest mediator candidate
view this gene in MGI
Marker Type: protein coding gene
Synonyms: 2410012A13Rik, Reprimo
Location: Chr2:54084093-54085552(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1915124 Ensembl Gene ID: ENSMUSG00000075334 Vega Gene ID: OTTMUSG00000012457
Entrez Gene ID: 67874 CCDS ID:
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human RPRM 56475
Rat Rprm 680110

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells

Vectors ES Cells
EUCOMM
Vector Construction in Progress Projects: 98830
Vectors ES Cells
NorCOMM
Design Requested Projects: 42245

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
14 0 1 0 view in Ensembl

Rps12-ps10

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Rps12-ps10 was found for the following reasons:
chromosome - 2

Gene Details no data available

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

Rps13-ps6

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Rps13-ps6 was found for the following reasons:
chromosome - 2

Gene Details

Marker Name(s): ribosomal protein S13, pseudogene 6
view this gene in MGI
Marker Type: pseudogene
Synonyms: Gm11654, OTTMUSG00000003121
Location: Chr2:143855649-143856076(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:3650996 Ensembl Gene ID: ENSMUSG00000082987 Vega Gene ID: OTTMUSG00000003121
Entrez Gene ID: 100043799 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

Rps15a-ps7

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Rps15a-ps7 was found for the following reasons:
chromosome - 2

Gene Details

Marker Name(s): ribosomal protein S15A, pseudogene 7
view this gene in MGI
Marker Type: pseudogene
Synonyms: Gm14166, OTTMUSG00000015855
Location: Chr2:152185291-152185682(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:3650538 Ensembl Gene ID: ENSMUSG00000081087 Vega Gene ID: OTTMUSG00000015855
Entrez Gene ID: 100043843 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

Rps19-ps7

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Rps19-ps7 was found for the following reasons:
chromosome - 2

Gene Details

Marker Name(s): ribosomal protein S19, pseudogene 7
view this gene in MGI
Marker Type: pseudogene
Synonyms: Gm14072, OTTMUSG00000015584
Location: Chr2:140073032-140073469(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:3652235 Ensembl Gene ID: ENSMUSG00000080006 Vega Gene ID: OTTMUSG00000015584
Entrez Gene ID: 269365 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells

Vectors ES Cells
KOMP-CSD
Withdrawn From Pipeline Projects: 40613
Vectors ES Cells
KOMP-Regeneron
Design Not Possible Projects: VG16649

DNA Clone Resources no data available

Rps21

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Rps21 was found for the following reasons:
colony_prefix - Rps21 2_A12>
chromosome - 2
targeting_vector - PG00168_Z_2_B02
escell - EPD0405_2_E11

Gene Details no data available

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
14 3 0 0 view in Ensembl