Available Products
Mammalian Phenotype
Chromosome
Marker Symbol

Browsing Data by Available Products: 'EUCOMM Mice'

Slc35f6

Slc35f6 was found for the following reasons:
ikmc_project_product_status_str - EUCOMM Mouse Available

Gene Details

Marker Name(s): solute carrier family 35, member F6
view this gene in MGI
Marker Type: protein coding gene
Synonyms: 4930471M23Rik, 5730478O19Rik, Tango9, p40
Location: Chr5:30647933-30659731(+)
Related Human Conditions (from OMIM) - no related Human Condition

WTSI Phenotyping

MP Ontology Based Heatmap
Allele Name Colony Prefix Colony Strain adipose tissue behavior/neurological cardiovascular system cellular craniofacial digestive/alimentary embryogenesis endocrine/exocrine gland growth/size hearing/vestibular/ear hematopoietic system homeostasis/metabolism immune system integument limbs/digits/tail liver/biliary system mortality/aging muscle nervous system other pigmentation renal/urinary system reproductive system respiratory system skeleton taste/olfaction tumorigenesis vision/eye
4930471M23Rik MCJX view view view view view view view view view view view view view view view view view view view view
Legend: No Raw Data No Significant Annotations Significant Annotation Present Link to a Test Report Page Link to a test report page
About This Heatmap

This heatmap is built up of top-level terms from the MP (Mammalian Phenotype) ontology. We have mapped a majority of the parameters in our tests to appropriate MP terms, so when we perform a given test we can say if it should be annotated with the given MP term (if the phenotype is significant). This is what you see in this heatmap - if a significant result has been annotated to a top-level MP term (or any of its children), the cell will be red, if the result was not significant, the cell will be blue.

Please Note: as mentioned above we do not annotate all of our phenotyping tests to the MP ontology. The tests that are excluded are: 'Adult LacZ Expression', 'Brain/Eye/Skin Histopathology', 'Embryo LacZ Expression', 'Fertility', 'Heart Histology', 'Micronuclei', 'MicroCT & Quantitative Faxitron', 'Plasma Immunoglobulins', 'Prepulse Inhibition', 'Recessive Lethal Study', 'Tail Epidermis Wholemount', 'Tissue Biobank' and 'Viability at Weaning'. You can find our results for these tests in the 'Phenotyping Test Based Heatmap' below.

Phenotyping Test Based Heatmap
Allele Name Colony Prefix Colony Strain Viability at weaning Recessive Lethal Study Fertility Embryo LacZ Expression Adult LacZ Expression General Observations Weight Curves Open Field Modified SHIRPA Grip Strength Hot Plate Dysmorphology Rotarod Non-Invasive Blood Pressure Prepulse Inhibition Indirect Calorimetry Glucose Tolerance (ip) Auditory Brainstem Response Body Composition (DEXA) X-ray Imaging Stress Induced Hyperthermia Eye Morphology Plasma Chemistry Plasma Immunoglobulins Haematology (CBC) Peripheral Blood Lymphocytes Micronuclei Tissue Biobank Heart Weight Heart Histology Tail Epidermis Wholemount Skin Histopathology Brain Histopathology Eye Histopathology MicroCT & Quantitative Faxitron Salmonella Challenge Citrobacter Challenge
4930471M23Rik MCJX view view view view view view view view view view view view view view view view view view view view view view view view view view view pdf view view
download a spreadsheet containing all WTSI phenotyping data
Legend - hover over each heading to get a more complete description
Test complete and data/resources are available Test is complete and the data are considered interesting Preliminary indication of an interesting phenotype
Test is complete but the data are not considered interesting Test not performed or applicable Test pending
Test abandoned Link to a Test Report Page Link to a test report page Link to a PDF Report Link to a pdf report

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources no data available

Slc38a10

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Slc38a10 was found for the following reasons:
ikmc_project_product_status_str - EUCOMM Mouse Available

Gene Details no data available

WTSI Phenotyping

MP Ontology Based Heatmap
Allele Name Colony Prefix Colony Strain adipose tissue behavior/neurological cardiovascular system cellular craniofacial digestive/alimentary embryogenesis endocrine/exocrine gland growth/size hearing/vestibular/ear hematopoietic system homeostasis/metabolism immune system integument limbs/digits/tail liver/biliary system mortality/aging muscle nervous system other pigmentation renal/urinary system reproductive system respiratory system skeleton taste/olfaction tumorigenesis vision/eye
Slc38a10tm1a(EUCOMM)Wtsi MALN view view view view view view view view view view view view view view view view view view view view
Slc38a10 MDEV view view view view view view view view view view view view view view view view view view view
Legend: No Raw Data No Significant Annotations Significant Annotation Present Link to a Test Report Page Link to a test report page
About This Heatmap

This heatmap is built up of top-level terms from the MP (Mammalian Phenotype) ontology. We have mapped a majority of the parameters in our tests to appropriate MP terms, so when we perform a given test we can say if it should be annotated with the given MP term (if the phenotype is significant). This is what you see in this heatmap - if a significant result has been annotated to a top-level MP term (or any of its children), the cell will be red, if the result was not significant, the cell will be blue.

Please Note: as mentioned above we do not annotate all of our phenotyping tests to the MP ontology. The tests that are excluded are: 'Adult LacZ Expression', 'Brain/Eye/Skin Histopathology', 'Embryo LacZ Expression', 'Fertility', 'Heart Histology', 'Micronuclei', 'MicroCT & Quantitative Faxitron', 'Plasma Immunoglobulins', 'Prepulse Inhibition', 'Recessive Lethal Study', 'Tail Epidermis Wholemount', 'Tissue Biobank' and 'Viability at Weaning'. You can find our results for these tests in the 'Phenotyping Test Based Heatmap' below.

Phenotyping Test Based Heatmap
Allele Name Colony Prefix Colony Strain Viability at weaning Recessive Lethal Study Fertility Embryo LacZ Expression Adult LacZ Expression General Observations Weight Curves Open Field Modified SHIRPA Grip Strength Hot Plate Dysmorphology Rotarod Non-Invasive Blood Pressure Prepulse Inhibition Indirect Calorimetry Glucose Tolerance (ip) Auditory Brainstem Response Body Composition (DEXA) X-ray Imaging Stress Induced Hyperthermia Eye Morphology Plasma Chemistry Plasma Immunoglobulins Haematology (CBC) Peripheral Blood Lymphocytes Micronuclei Tissue Biobank Heart Weight Heart Histology Tail Epidermis Wholemount Skin Histopathology Brain Histopathology Eye Histopathology MicroCT & Quantitative Faxitron Salmonella Challenge Citrobacter Challenge
Slc38a10tm1a(EUCOMM)Wtsi MALN view view view view view view view view view view view view view view view view view view view view view view view view view view view view pdf view view
Slc38a10 MDEV view view view view view view view view view view view view view view view view view view view pdf view view
download a spreadsheet containing all WTSI phenotyping data
Legend - hover over each heading to get a more complete description
Test complete and data/resources are available Test is complete and the data are considered interesting Preliminary indication of an interesting phenotype
Test is complete but the data are not considered interesting Test not performed or applicable Test pending
Test abandoned Link to a Test Report Page Link to a test report page Link to a PDF Report Link to a pdf report

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources no data available

Slc38a4

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Slc38a4 was found for the following reasons:
ikmc_project_product_status_str - EUCOMM Mouse Available

Gene Details no data available

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
26 13 9 3 view in Ensembl

Slc39a8

Slc39a8 was found for the following reasons:
ikmc_project_product_status_str - EUCOMM Mouse Available

Gene Details

Marker Name(s): solute carrier family 39 (metal ion transporter), member 8
view this gene in MGI
Marker Type: protein coding gene
Synonyms: 4933419D20Rik, AA986696, BIGM103, ZIP8
Location: Chr3:135825279-135888568(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1914797 Ensembl Gene ID: ENSMUSG00000053897 Vega Gene ID: OTTMUSG00000024378
Entrez Gene ID: 67547 CCDS ID:
Interpro Families
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human SLC39A8 64116
Rat Slc39a8 295455

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
23 2 3 0 view in Ensembl

Slc40a1

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Slc40a1 was found for the following reasons:
ikmc_project_product_status_str - EUCOMM Mouse Available

Gene Details no data available

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
25 2 0 1 view in Ensembl

Slc47a1

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Slc47a1 was found for the following reasons:
ikmc_project_product_status_str - EUCOMM Mouse Available

Gene Details no data available

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
22 6 1 2 view in Ensembl

Slc5a6

Slc5a6 was found for the following reasons:
ikmc_project_product_status_str - EUCOMM Mouse Available

Gene Details

Marker Name(s): solute carrier family 5 (sodium-dependent vitamin transporter), member 6
view this gene in MGI
Marker Type: protein coding gene
Synonyms:
Location: Chr5:31036036-31048924(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:2660847 Ensembl Gene ID: ENSMUSG00000006641 Vega Gene ID: OTTMUSG00000022376
Entrez Gene ID: 330064 CCDS ID:
Interpro Families
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human SLC5A6 8884
Rat Slc5a6 170551

WTSI Phenotyping

MP Ontology Based Heatmap
Allele Name Colony Prefix Colony Strain adipose tissue behavior/neurological cardiovascular system cellular craniofacial digestive/alimentary embryogenesis endocrine/exocrine gland growth/size hearing/vestibular/ear hematopoietic system homeostasis/metabolism immune system integument limbs/digits/tail liver/biliary system mortality/aging muscle nervous system other pigmentation renal/urinary system reproductive system respiratory system skeleton taste/olfaction tumorigenesis vision/eye
Slc5a6 MCXQ view view view view view view view view view view view view view view view view view view view
Legend: No Raw Data No Significant Annotations Significant Annotation Present Link to a Test Report Page Link to a test report page
About This Heatmap

This heatmap is built up of top-level terms from the MP (Mammalian Phenotype) ontology. We have mapped a majority of the parameters in our tests to appropriate MP terms, so when we perform a given test we can say if it should be annotated with the given MP term (if the phenotype is significant). This is what you see in this heatmap - if a significant result has been annotated to a top-level MP term (or any of its children), the cell will be red, if the result was not significant, the cell will be blue.

Please Note: as mentioned above we do not annotate all of our phenotyping tests to the MP ontology. The tests that are excluded are: 'Adult LacZ Expression', 'Brain/Eye/Skin Histopathology', 'Embryo LacZ Expression', 'Fertility', 'Heart Histology', 'Micronuclei', 'MicroCT & Quantitative Faxitron', 'Plasma Immunoglobulins', 'Prepulse Inhibition', 'Recessive Lethal Study', 'Tail Epidermis Wholemount', 'Tissue Biobank' and 'Viability at Weaning'. You can find our results for these tests in the 'Phenotyping Test Based Heatmap' below.

Phenotyping Test Based Heatmap
Allele Name Colony Prefix Colony Strain Viability at weaning Recessive Lethal Study Fertility Embryo LacZ Expression Adult LacZ Expression General Observations Weight Curves Open Field Modified SHIRPA Grip Strength Hot Plate Dysmorphology Rotarod Non-Invasive Blood Pressure Prepulse Inhibition Indirect Calorimetry Glucose Tolerance (ip) Auditory Brainstem Response Body Composition (DEXA) X-ray Imaging Stress Induced Hyperthermia Eye Morphology Plasma Chemistry Plasma Immunoglobulins Haematology (CBC) Peripheral Blood Lymphocytes Micronuclei Tissue Biobank Heart Weight Heart Histology Tail Epidermis Wholemount Skin Histopathology Brain Histopathology Eye Histopathology MicroCT & Quantitative Faxitron Salmonella Challenge Citrobacter Challenge
Slc5a6 MCXQ view view view view view view view view view view view view view view view view view view view view view view view view view
download a spreadsheet containing all WTSI phenotyping data
Legend - hover over each heading to get a more complete description
Test complete and data/resources are available Test is complete and the data are considered interesting Preliminary indication of an interesting phenotype
Test is complete but the data are not considered interesting Test not performed or applicable Test pending
Test abandoned Link to a Test Report Page Link to a test report page Link to a PDF Report Link to a pdf report

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
32 7 0 0 view in Ensembl

Slc7a11

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Slc7a11 was found for the following reasons:
ikmc_project_product_status_str - EUCOMM Mouse Available

Gene Details no data available

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
30 11 4 1 view in Ensembl

Slfn4

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Slfn4 was found for the following reasons:
ikmc_project_product_status_str - EUCOMM Mouse Available

Gene Details no data available

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
26 4 2 2 view in Ensembl

Slfnl1

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Slfnl1 was found for the following reasons:
ikmc_project_product_status_str - EUCOMM Mouse Available

Gene Details no data available

WTSI Phenotyping no data available

Mice

  • The 'ikmc-imits' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

IKMC Vectors and ES Cells

  • The 'ikmc-idcc_targ_rep' dataset has returned an error for this query.   more information
    MartSearch::DataSourceError
    This is an important dataset for this view. The data in this view may not be complete without this information.
    Please try resubmitting your search to include this dataset.
          Biomart::BiomartError: Biomart error.
        

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
22 10 0 2 view in Ensembl