Information on the CNV project and CNV data can be found at at the FAQ
It corresponds to the HapMap Individual that has been used for the WGTP array.
The 2 GAL file are for the mapping on the WGTP array.
WGTP_array_map1.gal is to use with experiments until 23/09/2005 and WGTP_array_map2.gal with experiments from 27/09/2005.
The text file WGTP_clone_map_NCBIxx.txt contains the mapping of the Human clones ( for both assembly NCBI35 (May 2004) and NCBI36 (March 2006) ).
This single text file contains the mean dye-swap intensity for each clone in each individual.
All experimental artefacts , as given by this list, have been removed from this file.
Foreach individual there are 2 files : one per intensity signal ( red, green ).
Fluorescence intensities and log2 ratio values were extracted using the Bluefuse software (Bluegnome Ltd) from the scanner (raw) images.
Foreach individual there are 2 files : one per intensity signal ( red, green ).
These excel files are derived from the Raw intensities excel file after a post processing from the software BlueFuse.
This post processing consisted in :
Foreach individual there are 2 files : one per intensity signal ( red, green ).
These images are the raw output from the laser scanner (Agilent Technologies) after the experiment.
Only examples are available here .
For any interest in downloading some other image files, please contact Matthew Hurles .
All the validation datafiles are in the same format than the one provided for the WGTP Array.
