The table below summarises the situation regarding genomic sequencing of Leishmania major Friedlin. The data have been culled from EMBL. A sequence is defined as being finished if it contains no ambiguous bases, and thus all "sequencing in progress" will NOT come under this category.
As many of the chromosomes are now being sequenced by the "whole chromosome shotgun" method, preliminary annotation of assembled shotgun reads are also provided to the community, but should be used with caution.
PLEASE NOTE: Automated annotations of whole chromosome shotgun contigs are now stored in GeneDB and will not be submitted to EMBL until the relevant chromosome sequences are completed.
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| Date |   | Accession | Clone | Chr. | Bases GATC....Others | Finished | Annotated | ORFs (Known, hypo.) | Coding strand switch | ORFmap | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 17-SEP-2002 |   | AC087068 | L8542 | 29 | 35428 | 1 | no | no | 0 (0, 0) | - |   |
| 10-SEP-2002 |   | AC092776 | L6457 | 2 | 42080 | 0 | yes | no | 0 (0, 0) | - |   |
| 10-SEP-2002 |   | AC093541 | L4866 | 2 | 16910 | 0 | yes | no | 0 (0, 0) | - |   |
| 24-AUG-2002 |   | AC012326 | L4267 | 35 | 33903 | 0 | yes | no | 0 (0, 0) | - |   |
| 21-AUG-2002 |   | AC018661 | L3836 | 35 | 38693 | 0 | yes | no | 0 (0, 0) | - |   |
| 20-AUG-2002 |   | AC009805 | L9280 | 35 | 37236 | 0 | yes | no | 0 (0, 0) | - |   |
| 20-AUG-2002 |   | AC078947 | L8286 | 35 | 36775 | 0 | yes | no | 0 (0, 0) | - |   |
| 20-AUG-2002 |   | AC036105 | L937 | 35 | 34283 | 0 | yes | no | 0 (0, 0) | - |   |
| 15-AUG-2002 |   | AC129009 | LB02354 | 29 | 123761 | 839 | no | no | 0 (0, 0) | - |   |
| 15-AUG-2002 |   | AC129714 | LB1609 | 27 | 115253 | 747 | no | no | 0 (0, 0) | - |   |
| 14-AUG-2002 |   | AC129011 | LB02569 | 27 | 126291 | 1009 | no | no | 0 (0, 0) | - |   |
| 07-AUG-2002 |   | AC010555 | L4492 | 35 | 35754 | 0 | yes | no | 0 (0, 0) | - |   |
| 24-JUL-2002 |   | AC129010 | LB02369 | 29 | 146700 | 2300 | no | no | 0 (0, 0) | - |   |
| 24-JUL-2002 |   | AC018749 | L8840 | 35 | 35870 | 0 | yes | no | 0 (0, 0) | - |   |
| 18-JUL-2002 |   | AC127673 | LB03387 | 27 | 119361 | 639 | no | no | 0 (0, 0) | - |   |
| 18-JUL-2002 |   | AC123910 | LB03152 | 29 | 134775 | 725 | no | no | 0 (0, 0) | - |   |
| 18-JUL-2002 |   | AC125412 | LB01811 | 27 | 113627 | 373 | no | no | 0 (0, 0) | - |   |
| 12-JUL-2002 |   | AC121231 | P684 | 35 | 109962 | 538 | no | no | 0 (0, 0) | - |   |
| 10-JUL-2002 |   | AC121230 | LB01680 | 2 | 92301 | 449 | no | no | 0 (0, 0) | - |   |
| 09-JUL-2002 |   | AC112207 | LB00429 | 27 | 104777 | 973 | no | no | 0 (0, 0) | - |   |
| 09-JUL-2002 |   | AC012051 | L796 | 35 | 36068 | 0 | yes | no | 0 (0, 0) | - |   |
| 28-JUN-2002 |   | AC098843 | LB00319 | 35 | 88763 | 0 | yes | no | 0 (0, 0) | - |   |
| 28-JUN-2002 |   | AC074202 | L4946 | 35 | 35546 | 0 | yes | no | 0 (0, 0) | - |   |
| 12-JUN-2002 |   | AC016658 | L5588 | 35 | 30749 | 0 | yes | no | 0 (0, 0) | - |   |
| 11-JUN-2002 |   | AC103910 | LB00253 | 35 | 99790 | 0 | yes | no | 0 (0, 0) | - |   |
| 11-JUN-2002 |   | AC012524 | L4270 | 35 | 38270 | 0 | yes | no | 0 (0, 0) | - |   |
| 07-JUN-2002 |   | AC124028 | L1110_S59 | 35 | 6315 | 0 | yes | no | 0 (0, 0) | - |   |
| 30-MAY-2002 |   | AC119069 | LB01525 | 35 | 98426 | 574 | no | no | 0 (0, 0) | - |   |
| 23-MAY-2002 |   | AC119500 | LB01554 | 29 | 145547 | 953 | no | no | 0 (0, 0) | - |   |
| 23-MAY-2002 |   | AC092775 | L177 | 35 | 38812 | 0 | yes | no | 0 (0, 0) | - |   |
| 23-MAY-2002 |   | AC009605 | L8019 | 35 | 35192 | 0 | yes | no | 0 (0, 0) | - |   |
| 18-MAY-2002 |   | AC121492 | LB03590 | 27 | 89590 | 5410 | no | no | 0 (0, 0) | - |   |
| 16-MAY-2002 |   | AC117271 | L2489 | 29 | 39689 | 311 | no | no | 0 (0, 0) | - |   |
| 16-MAY-2002 |   | AC011913 | L4407 | 35 | 38585 | 0 | yes | no | 0 (0, 0) | - |   |
| 08-MAY-2002 |   | AC120525 | L5752b | 35 | 1321 | 0 | yes | no | 0 (0, 0) | - |   |
| 30-APR-2002 |   | AC016024 | L7948 | 35 | 39474 | 0 | yes | no | 0 (0, 0) | - |   |
| 27-APR-2002 |   | AL139794 | chr_4_right_end | 4 | 247462 | 0 | yes | yes | 68 (21, 47) | no | ORFmap |
| 27-APR-2002 |   | AC068666 | L1905 | 35 | 40812 | 0 | yes | no | 0 (0, 0) | - |   |
| 25-APR-2002 |   | AC108135 | LB01641 | 35 | 108274 | 726 | no | no | 0 (0, 0) | - |   |
| 20-APR-2002 |   | AC078892 | L5581 | 35 | 30788 | 0 | yes | no | 0 (0, 0) | - |   |
| 19-APR-2002 |   | AC117272 | L2849 | 27 | 24302 | 298 | no | no | 0 (0, 0) | - |   |
| 17-APR-2002 |   | AC091120 | L6541 | 2 | 38819 | 0 | yes | no | 0 (0, 0) | - |   |
| 02-APR-2002 |   | AC021664 | L4427 | 35 | 38373 | 0 | yes | no | 0 (0, 0) | - |   |
| 27-MAR-2002 |   | AC096682 | L1159 | 35 | 38134 | 0 | yes | no | 0 (0, 0) | - |   |
| 05-MAR-2002 |   | AC107205 | L3624 | 35 | 16843 | 0 | yes | no | 0 (0, 0) | - |   |
| 05-MAR-2002 |   | AC087837 | B4397 | 2 | 38420 | 0 | yes | no | 0 (0, 0) | - |   |
| 19-FEB-2002 |   | AC104180 | LB00273 | 27 | 90998 | 502 | no | no | 0 (0, 0) | - |   |
| 14-FEB-2002 |   | AC011617 | L2993 | 35 | 35868 | 0 | yes | no | 0 (0, 0) | - |   |
| 08-FEB-2002 |   | AC092774 | L1655 | 2 | 35503 | 0 | yes | no | 0 (0, 0) | - |   |
| 08-FEB-2002 |   | AC087161 | B2017 | 2 | 36774 | 0 | yes | no | 0 (0, 0) | - |   |
| 08-FEB-2002 |   | AC084317 | B2015 | 2 | 36341 | 1 | no | no | 0 (0, 0) | - |   |
| 05-FEB-2002 |   | AC087411 | P359 | 35 | 63044 | 1 | no | no | 0 (0, 0) | - |   |
| 05-FEB-2002 |   | AC098845 | LB00646 | 27 | 91645 | 855 | no | no | 0 (0, 0) | - |   |
| 05-FEB-2002 |   | AC021894 | L8650 | 35 | 35365 | 0 | yes | no | 0 (0, 0) | - |   |
| 05-FEB-2002 |   | AC093542 | L5003 | 2 | 38376 | 0 | yes | no | 0 (0, 0) | - |   |
| 05-FEB-2002 |   | AC011017 | L3184 | 35 | 36504 | 0 | yes | no | 0 (0, 0) | - |   |
| 29-JAN-2002 |   | AC105442 | LB00329 | 35 | 124312 | 300 | no | no | 0 (0, 0) | - |   |
| 18-JAN-2002 |   | AC068783 | L108 | 35 | 40020 | 0 | yes | no | 0 (0, 0) | - |   |
| 16-JAN-2002 |   | AC087796 | P568 | 35 | 117145 | 1 | no | no | 0 (0, 0) | - |   |
| 12-JAN-2002 |   | AC098797 | LB01304 | 35 | 117714 | 0 | yes | no | 0 (0, 0) | - |   |
| 07-JAN-2002 |   | AL359716 | P265 | 13 | 177648 | 0 | yes | yes | 44 (17, 27) | no | ORFmap |
| 05-JAN-2002 |   | AC105441 | L4252 | 35 | 38600 | 900 | no | no | 0 (0, 0) | - |   |
| 29-DEC-2001 |   | AC098846 | LB01394 | 27 | 61646 | 954 | no | no | 0 (0, 0) | - |   |
| 29-DEC-2001 |   | AC098844 | LB00340 | 35 | 87351 | 649 | no | no | 0 (0, 0) | - |   |
| 15-DEC-2001 |   | AC104181 | LB00846 | 2 | 47111 | 0 | yes | no | 0 (0, 0) | - |   |
| 14-DEC-2001 |   | AC104614 | P921 | 2 | 36665 | 1835 | no | no | 0 (0, 0) | - |   |
| 30-NOV-2001 |   | AC103911 | LB00932 | 35 | 22809 | 0 | yes | no | 0 (0, 0) | - |   |
| 06-DEC-2001 |   | AC079026 | L9365 | 21 | 30098 | 0 | yes | no | 0 (0, 0) | - |   |
| 06-DEC-2001 |   | AC018847 | L8706 | 35 | 28498 | 0 | yes | no | 0 (0, 0) | - |   |
| 05-DEC-2001 |   | AC095028 | P864 | unknown | 89545 | 705 | no | no | 0 (0, 0) | - |   |
| 05-DEC-2001 |   | AC091510 | P1023 | unknown | 104142 | 28 | no | no | 0 (0, 0) | - |   |
| 05-DEC-2001 |   | AC092777 | L975 | 27 | 30858 | 1142 | no | no | 0 (0, 0) | - |   |
| 05-DEC-2001 |   | AC073566 | L5024 | 35 | 40613 | 387 | no | no | 0 (0, 0) | - |   |
| 05-DEC-2001 |   | AC009601 | L165 | 35 | 39424 | 1 | no | no | 0 (0, 0) | - |   |
| 05-DEC-2001 |   | AC011015 | L1514 | 35 | 36685 | 0 | yes | no | 0 (0, 0) | - |   |
| 05-DEC-2001 |   | AC090053 | P323 | unknown | 66637 | 0 | yes | no | 0 (0, 0) | - |   |
| 20-NOV-2001 |   | AL605486 | L7069 | 21 | 35630 | 0 | yes | yes | 10 (4, 6) | no | ORFmap |
| 20-NOV-2001 |   | AC009604 | L3394 | 35 | 35662 | 0 | yes | no | 0 (0, 0) | - |   |
| 06-NOV-2001 |   | AC087838 | P673 | 35 | 133715 | 0 | yes | no | 0 (0, 0) | - |   |
| 06-NOV-2001 |   | AC008054 | L8453 | 35 | 39583 | 0 | yes | no | 0 (0, 0) | - |   |
| 06-NOV-2001 |   | AC008152 | L7936 | 35 | 23866 | 1134 | no | no | 0 (0, 0) | - |   |
| 06-NOV-2001 |   | AC084318 | L5752 | 35 | 27851 | 0 | yes | no | 0 (0, 0) | - |   |
| 06-NOV-2001 |   | AC016528 | L4123 | 35 | 34715 | 0 | yes | no | 0 (0, 0) | - |   |
| 03-NOV-2001 |   | AC008242 | L979 | 27 | 34410 | 0 | yes | no | 0 (0, 0) | - |   |
| 02-NOV-2001 |   | AC009602 | L2259 | 35 | 37772 | 6 | no | no | 0 (0, 0) | - |   |
| 02-NOV-2001 |   | AC087836 | B4162 | 2 | 41377 | 123 | no | no | 0 (0, 0) | - |   |
| 02-NOV-2001 |   | AC087058 | B3979 | 2 | 38038 | 0 | yes | no | 0 (0, 0) | - |   |
| 26-SEP-2001 |   | AC010851 | L4134 | 22 | 33339 | 0 | yes | no | 0 (0, 0) | - |   |
| 06-SEP-2001 |   | AL354514 | L9501 | 5 | 7626 | 0 | yes | no | 0 (0, 0) | - |   |
| 05-SEP-2001 |   | AL359683 | P1046 | 13 | 221641 | 0 | yes | yes | 63 (32, 31) | yes | ORFmap |
| 04-SEP-2001 |   | AL138558 | L3277 | 23 | 38874 | 0 | yes | yes | 5 (2, 3) | no | ORFmap |
| 04-SEP-2001 |   | AL603794 | L7913 | 13 | 37231 | 0 | yes | yes | 12 (2, 10) | no | ORFmap |
| 24-AUG-2001 |   | AL390114 | Chr.12 | 12 | 755483 | 1708 | no | yes | 157 (55, 104) | yes | ORFmap |
| 28-AUG-2001 |   | AL160371 | Chr.15 | 15 | 300565 | 3411 | no | yes | 85 (41, 46) | yes | ORFmap |
| 08-AUG-2001 |   | AL512293 | P696 | 14 | 171748 | 400 | no | no | 0 (0, 0) | - |   |
| 27-JUL-2001 |   | AL596287 | L1508 | 21 | 40000 | 13 | no | yes | 9 (3, 6) | no | ORFmap |
| 27-JUL-2001 |   | AL596286 | L8806 | 23 | 37386 | 0 | yes | yes | 11 (3, 8) | no | ORFmap |
| 26-JUL-2001 |   | AL389894 | chr_4_left_end | 4 | 225394 | 0 | yes | yes | 55 (20, 35) | yes | ORFmap |
| 26-JUL-2001 |   | AL354552 | L3204 | 23 | 36264 | 0 | yes | yes | 13 (5, 8) | yes | ORFmap |
| 25-JUL-2001 |   | AL596272 | L1994 | 4 | 21597 | 0 | yes | yes | 8 (4, 4) | no | ORFmap |
| 25-JUL-2001 |   | AL596274 | L1994 | 5 | 19177 | 0 | yes | yes | 6 (2, 4) | no | ORFmap |
| 25-JUL-2001 |   | AL596273 | L3747 | 5 | 36687 | 105 | no | yes | 8 (6, 2) | no | ORFmap |
| 24-JUL-2001 |   | AC092735 | L717 | 27 | 25363 | 137 | no | no | 0 (0, 0) | - |   |
| 09-JUN-2001 |   | AC091512 | P939 | 35 | 121955 | 95 | no | no | 0 (0, 0) | - |   |
| 09-JUN-2001 |   | AC091511 | P860 | 35 | 97911 | 0 | yes | no | 0 (0, 0) | - |   |
| 19-MAY-2001 |   | AL499624 | Chr.36 | 36 | 3320645 | 209207 | no | no | 0 (0, 0) | - |   |
| 19-MAY-2001 |   | AL499623 | Chr.34 | 34 | 1613409 | 107368 | no | no | 0 (0, 0) | - |   |
| 19-MAY-2001 |   | AL499621 | Chr.31 | 31 | 2014507 | 103456 | no | no | 0 (0, 0) | - |   |
| 08-MAY-2001 |   | AC077692 | L4788 | 21 | 39259 | 0 | yes | no | 0 (0, 0) | - |   |
| 27-APR-2001 |   | AC015554 | L7841 | 35 | 31719 | 81 | no | no | 0 (0, 0) | - |   |
| 27-APR-2001 |   | AC010869 | L7195 | 35 | 38238 | 162 | no | no | 0 (0, 0) | - |   |
| 27-APR-2001 |   | AC019154 | L5134 | 35 | 39190 | 100 | no | no | 0 (0, 0) | - |   |
| 24-APR-2001 |   | AC005806 | L7886 | 27 | 30656 | 60 | no | no | 0 (14, 0) | - |   |
| 24-APR-2001 |   | AC005801 | 5.1.1 | 35 | 34984 | 0 | yes | yes | 12 (12, 0) | no | ORFmap |
| 20-APR-2001 |   | AL583932 | L5213 | 5 | 36328 | 0 | yes | yes | 11 (5, 6) | no | ORFmap |
| 20-APR-2001 |   | AL354512 | L1232 | 5 | 39982 | 0 | yes | yes | 10 (6, 5) | yes | ORFmap |
| 18-APR-2001 |   | AC058781 | L344 | 35 | 39516 | 0 | yes | yes | 15 (2, 13) | no | ORFmap |
| 14-APR-2001 |   | AC084419 | L411 | 35 | 38314 | 0 | yes | yes | 7 (2, 5) | no | ORFmap |
| 13-APR-2001 |   | AC009782 | L5178 | 35 | 39945 | 0 | yes | yes | 10 (0, 10) | no | ORFmap |
| 11-APR-2001 |   | AC084329 | L2289 | 35 | 5520 | 0 | yes | yes | 1 (1, 0) | no | ORFmap |
| 26-MAR-2001 |   | AL356456 | L9127, L3286, L3175, L8286, L7480 | ?35 | 132099 | 7498 | no | no | 0 (0, 0) | - |   |
| 19-MAR-2001 |   | AL499612 | L9356 | 14 | 24011 | 0 | yes | no | 0 (0, 0) | - |   |
| 19-MAR-2001 |   | AL138618 | L2954 | 23 | 39490 | 0 | yes | yes | 12 (7, 7) | no | ORFmap |
| 20-MAR-2001 |   | AL049768 | L6586 | 23 | 40064 | 0 | yes | yes | 7 (3, 4) | no | ORFmap |
| 11-MAR-2001 |   | AL499613 | L4812 | 14 | 33624 | 0 | yes | no | 0 (0, 0) | - |   |
| 22-FEB-2001 |   | AL583933 | L6071 | 5 | 33652 | 504 | no | yes | 12 (7, 5) | yes | ORFmap |
| 22-FEB-2001 |   | AL352992 | L5213T | ? | 29074 | 0 | yes | yes | 8 (2, 6) | no | ORFmap |
| 20-FEB-2001 |   | AL583907 | L2027 | 14 | 37562 | 0 | yes | yes | 9 (2, 7) | no | ORFmap |
| 20-FEB-2001 |   | AL512294 | L654 | 14 | 40351 | 0 | yes | yes | 11 (0, 11) | no | ORFmap |
| 19-FEB-2001 |   | AL354592 | L8138 | 5 | 39491 | 0 | yes | yes | 10 (3, 7) | yes | ORFmap |
| 06-FEB-2001 |   | AL354513 | L6783 | 5 | 31656 | 0 | yes | yes | 12 (8, 4) | no | ORFmap |
| 19-JAN-2001 |   | AL513062 | L2230 | 14 | 37731 | 0 | yes | yes | 9 (4, 5) | no | ORFmap |
| 19-JAN-2001 |   | AL512295 | L490 | 14 | 35669 | 0 | yes | yes | 15 (9, 6) | no | ORFmap |
| 16-DEC-2000 |   | AL358652 | P1408 | 14 | 109041 | 0 | yes | yes | 33 (15, 18) | no | ORFmap |
| 16-DEC-2000 |   | AL499622 | Chr.32, Chr.33 | 32 | 2553202 | 174507 | no | no | 0 (0, 0) | - |   |
| 16-DEC-2000 |   | AL499620 | Chr.18, Chr.19, Chr.20, Chr.22 | 18 | 1018921 | 72325 | no | no | 0 (0, 0) | - |   |
| 16-DEC-2000 |   | AL499619 | Chr.16, Chr.17 | 16 | 949910 | 80195 | no | no | 0 (0, 0) | - |   |
| 16-DEC-2000 |   | AL499618 | Chr.25 | 25 | 851523 | 67023 | no | no | 0 (0, 0) | - |   |
| 16-DEC-2000 |   | AL358712 | L2185 | 19 | 35424 | 0 | yes | yes | 10 (7, 3) | no | ORFmap |
| 15-DEC-2000 |   | AL499615 | L4766 | 19 | 26122 | 0 | yes | yes | 8 (6, 2) | no | ORFmap |
| 15-DEC-2000 |   | AL499614 | L5852 | 14 | 30959 | 433 | no | yes | 7 (4, 3) | no | ORFmap |
| 15-DEC-2000 |   | AL358632 | L6754 | 19 | 15121 | 0 | yes | yes | 4 (2, 2) | no | ORFmap |
| 16-DEC-2000 |   | AL357592 | L5856 | 5 | 23600 | 0 | yes | yes | 6 (2, 4) | no | ORFmap |
| 23-NOV-2000 |   | AC011016 | L218 | 35 | 33484 | 16 | no | yes | 6 (0, 6) | no | ORFmap |
| 19-NOV-2000 |   | AL163505 | L3640 | 21 | 37390 | 0 | yes | yes | 17 (10, 7) | yes | ORFmap |
| 19-NOV-2000 |   | AL133468 | L3238 | 19 | 29123 | 0 | yes | yes | 9 (2, 7) | no | ORFmap |
| 30-OCT-2000 |   | AL359776 | L5649 | 13 | 38767 | 0 | yes | yes | 13 (5, 8) | no | ORFmap |
| 30-OCT-2000 |   | AL449144 | P214 | 13 | 163194 | 0 | yes | yes | 45 (17, 28) | yes | ORFmap |
| 29-OCT-2000 |   | AL445678 | L7845 | 35 | 29713 | 98 | no | yes | 11 (2, 9) | yes | ORFmap |
| 25-OCT-2000 |   | AL445944 | L5174 | 21 | 35745 | 0 | yes | yes | 11 (5, 6) | no | ORFmap |
| 25-OCT-2000 |   | AL445943 | L5882 | 21 | 14000 | 0 | yes | yes | 3 (0, 3) | no | ORFmap |
| 25-OCT-2000 |   | AL359777 | L6293 | 13 | 31252 | 0 | yes | yes | 8 (5, 3) | no | ORFmap |
| 25-OCT-2000 |   | AL354553 | L232 | 14 | 35085 | 0 | yes | yes | 7 (4, 3) | no | ORFmap |
| 27-OCT-2000 |   | AL446005 | L6520 | 21 | 40438 | 0 | yes | yes | 13 (6, 7) | no | ORFmap |
| 27-OCT-2000 |   | AL446004 | L8329 | 21 | 27972 | 0 | yes | yes | 9 (7, 2) | no | ORFmap |
| 27-OCT-2000 |   | AL359775 | L3665 | 13 | 35042 | 0 | yes | yes | 7 (4, 3) | no | ORFmap |
| 27-OCT-2000 |   | AL359774 | L2802 | 13 | 35815 | 0 | yes | yes | 10 (3, 7) | no | ORFmap |
| 04-OCT-2000 |   | AC078900 | L7480 | 35 | 44063 | 0 | yes | yes | 10 (1, 9) | no | ORFmap |
| 07-SEP-2000 |   | AC022284 | L3377 | 35 | 37860 | 0 | yes | yes | 11 (5, 6) | no | ORFmap |
| 25-AUG-2000 |   | AL391629 | L3180 | 13 | 26410 | 0 | yes | yes | 6 (1, 5) | no | ORFmap |
| 23-AUG-2000 |   | AL391562 | L3557 | 14 | 26525 | 0 | yes | yes | 5 (5, 0) | no | ORFmap |
| 18-AUG-2000 |   | AL391394 | L3856 | 21 | 35909 | 0 | yes | yes | 11 (13, 1) | yes | ORFmap |
| 14-AUG-2000 |   | AL160493 | Chr.26 | 26 | 660034 | 17080 | no | yes | 506 (272, 234) | yes | ORFmap |
| 11-AUG-2000 |   | AL391263 | L901 | 21 | 35201 | 0 | yes | yes | 9 (2, 7) | no | ORFmap |
| 11-AUG-2000 |   | AL359773 | P1295 | 14 | 99509 | 0 | yes | yes | 26 (8, 18) | no | ORFmap |
| 11-AUG-2000 |   | AC016161 | L8149 | 35 | 35337 | 0 | yes | yes | 8 (3, 5) | no | ORFmap |
| 01-AUG-2000 |   | AL390935 | Chr.28 | 28 | 445156 | 75833 | no | yes | 304 (201, 102) | yes | ORFmap |
| 23-JUN-2000 |   | AL359781 | L3302 | 21 | 40374 | 0 | yes | yes | 7 (4, 3) | no | ORFmap |
| 23-JUN-2000 |   | AL359778 | L163 | 21 | 27081 | 0 | yes | yes | 7 (2, 5) | no | ORFmap |
| 19-JUL-2000 |   | AL390096 | L4788 | 21 | 16271 | 0 | yes | yes | 4 (4, 0) | no | ORFmap |
| 19-JUL-2000 |   | AL390075 | L1375 | 21 | 38195 | 0 | yes | yes | 11 (5, 6) | yes | ORFmap |
| 11-JUL-2000 |   | AL365476 | L8382 | ? | 25912 | 2422 | no | yes | 17 (4, 13) | yes | ORFmap |
| 06-JUL-2000 |   | AL365154 | L2464 | 13 | 36583 | 0 | yes | yes | 15 (7, 8) | no | ORFmap |
| 15-JUN-2000 |   | AL135958 | L8980 | 19 | 13700 | 0 | yes | yes | 7 (4, 3) | no | ORFmap |
| 15-JUN-2000 |   | AL135930 | L4738 | 19 | 35079 | 0 | yes | yes | 6 (3, 3) | no | ORFmap |
| 15-JUN-2000 |   | AL133425 | L374 | 19 | 21200 | 0 | yes | yes | 4 (3, 1) | no | ORFmap |
| 14-JUN-2000 |   | AL359217 | L240 | 23 | 28110 | 0 | yes | yes | 6 (2, 4) | no | ORFmap |
| 14-JUN-2000 |   | AL354533 | L6294 | 21 | 29252 | 0 | yes | yes | 7 (2, 5) | no | ORFmap |
| 14-JUN-2000 |   | AL354532 | L1177 | 21 | 34135 | 0 | yes | yes | 8 (2, 6) | no | ORFmap |
| 14-JUN-2000 |   | AL138518 | L5341 | 19 | 35473 | 0 | yes | yes | 9 (3, 6) | no | ORFmap |
| 14-JUN-2000 |   | AL135941 | L391 | 19 | 34266 | 0 | yes | yes | 9 (3, 6) | no | ORFmap |
| 14-JUN-2000 |   | AL133443 | L5529 | 23 | 35134 | 0 | yes | yes | 10 (1, 9) | no | ORFmap |
| 14-JUN-2000 |   | AL121861 | L4326 | 23 | 36361 | 0 | yes | yes | 13 (4, 9) | no | ORFmap |
| 14-JUN-2000 |   | AL117319 | L2903 | 19 | 37046 | 0 | yes | yes | 6 (2, 4) | no | ORFmap |
| 14-JUN-2000 |   | AL117268 | L4520 | 19 | 38303 | 0 | yes | yes | 11 (3, 8) | no | ORFmap |
| 03-JUN-2000 |   | AL357593 | L2267 | 5 | 14880 | 120 | no | yes | 4 (0, 4) | no | ORFmap |
| 31-MAY-2000 |   | AC009603 | L3342 | 35 | 35573 | 0 | yes | yes | 12 (9, 3) | no | ORFmap |
| 31-MAY-2000 |   | AC005804 | 6.1.1 | 35 | 42159 | 1 | no | yes | 13 (13, 0) | no | ORFmap |
| 22-MAY-2000 |   | AL356713 | L4325 | 13 | 36102 | 0 | yes | yes | 8 (2, 6) | no | ORFmap |
| 16-MAY-2000 |   | AL356246 | L1923 | 14 | 40309 | 0 | yes | yes | 10 (5, 5) | no | ORFmap |
| 11-MAY-2000 |   | AC013257 | L4286 | 35 | 41193 | 0 | yes | yes | 8 (3, 5) | no | ORFmap |
| 11-MAY-2000 |   | AC022473 | L354 | 35 | 32394 | 0 | yes | yes | 9 (0, 9) | no | ORFmap |
| 09-MAY-2000 |   | AC068784 | L1340 | 35 | 28304 | 196 | no | no | 0 (0, 0) | - |   |
| 08-MAY-2000 |   | AF239995 | L8530 | 5 | 40619 | 1 | no | yes | 11 (0, 11) | yes | ORFmap |
| 30-APR-2000 |   | AL354572 | L5808 | 19 | 28993 | 0 | yes | yes | 9 (1, 8) | no | ORFmap |
| 30-APR-2000 |   | AL160491 | L5226 | 19 | 3101 | 0 | yes | yes | 1 (0, 1) | no | ORFmap |
| 30-APR-2000 |   | AL161414 | L5515 | 19 | 35621 | 0 | yes | yes | 5 (2, 3) | no | ORFmap |
| 29-APR-2000 |   | AL161416 | L4803 | 19 | 37231 | 0 | yes | yes | 8 (3, 5) | no | ORFmap |
| 28-APR-2000 |   | AC068068 | L5666 | 2 | 36997 | 503 | no | no | 0 (0, 0) | - |   |
| 19-APR-2000 |   | AL352980 | L7758 | 5 | 34334 | 0 | yes | yes | 5 (3, 2) | no | ORFmap |
| 09-APR-2000 |   | AL163552 | L5075 | 14 | 35616 | 0 | yes | yes | 9 (3, 6) | yes | ORFmap |
| 07-APR-2000 |   | AL163492 | L787 | 19 | 16611 | 0 | yes | yes | 4 (0, 4) | no | ORFmap |
| 22-MAR-2000 |   | AL133435 | L7171 | 21 | 37578 | 0 | yes | yes | 14 (8, 6) | no | ORFmap |
| 15-MAR-2000 |   | AC012381 | L3223 | 3 | 35493 | 0 | yes | yes | 12 (4, 8) | no | ORFmap |
| 07-MAR-2000 |   | AC005935 | L7234 | 3 | 29306 | 0 | yes | yes | 10 (4, 6) | no | ORFmap |
| 07-MAR-2000 |   | AC005930 | L712 | 3 | 41285 | 0 | yes | yes | 8 (1, 7) | no | ORFmap |
| 02-MAR-2000 |   | AC005931 | L7472 | 3 | 29359 | 0 | yes | yes | 5 (2, 3) | no | ORFmap |
| 24-FEB-2000 |   | AC005929 | L6910 | 3 | 41944 | 0 | yes | yes | 11 (3, 8) | no | ORFmap |
| 24-FEB-2000 |   | AC005928 | L6290 | 3 | 37969 | 0 | yes | yes | 6 (1, 5) | yes | ORFmap |
| 23-FEB-2000 |   | AC004145 | L5801 | 3 | 35868 | 0 | yes | yes | 6 (2, 4) | no | ORFmap |
| 18-FEB-2000 |   | AL157416 | L6066 | 19 | 35816 | 0 | yes | yes | 8 (4, 4) | yes | ORFmap |
| 18-FEB-2000 |   | AL157415 | L8325 | 5 | 36664 | 0 | yes | yes | 13 (2, 11) | no | ORFmap |
| 24-FEB-2000 |   | AC005892 | L505 | 3 | 34137 | 0 | yes | yes | 9 (3, 6) | no | ORFmap |
| 25-FEB-2000 |   | AC005836 | L509 | 3 | 37762 | 0 | yes | yes | 7 (3, 4) | no | ORFmap |
| 17-FEB-2000 |   | AL139796 | L6823 | 19 | 8664 | 0 | yes | yes | 3 (2, 1) | no | ORFmap |
| 17-FEB-2000 |   | AL138973 | L685 | 23 | 37243 | 0 | yes | yes | 11 (3, 8) | no | ORFmap |
| 18-FEB-2000 |   | AC008240 | L9259 | 22 | 17256 | 3 | no | no | 0 (0, 0) | - |   |
| 15-FEB-2000 |   | AC005941 | L5204 | 3 | 42079 | 0 | yes | yes | 9 (1, 7) | no | ORFmap |
| 15-FEB-2000 |   | AC007061 | L1559 | 3 | 37224 | 0 | yes | yes | 10 (2, 7) | no | ORFmap |
| 15-FEB-2000 |   | AC005927 | L3561 | 3 | 30219 | 0 | yes | yes | 7 (2, 4) | no | ORFmap |
| 04-FEB-2000 |   | AC005893 | L822 | 3 | 35018 | 0 | yes | yes | 13 (6, 7) | no | ORFmap |
| 04-FEB-2000 |   | AC005802 | L6202 | 3 | 29641 | 0 | yes | yes | 8 (2, 5) | no | ORFmap |
| 01-FEB-2000 |   | AL133484 | L236 | 19 | 35476 | 0 | yes | yes | 5 (2, 3) | no | ORFmap |
| 27-JAN-2000 |   | AC005766 | L4625 | 3 | 37641 | 0 | yes | yes | 15 (7, 8) | no | ORFmap |
| 26-JAN-2000 |   | AC005767 | L7535 | 3 | 40339 | 0 | yes | yes | 16 (8, 8) | no | ORFmap |
| 14-JAN-2000 |   | AL136326 | L377 | 23 | 40673 | 0 | yes | yes | 9 (3, 6) | no | ORFmap |
| 23-DEC-1999 |   | AL135898 | L673 | 23 | 21057 | 0 | yes | yes | 4 (2, 2) | yes | ORFmap |
| 22-DEC-1999 |   | AC005761 | L952 | 3 | 17551 | 0 | yes | yes | 5 (3, 2) | yes | ORFmap |
| 15-DEC-1999 |   | AL132763 | L4768 | 23 | 40969 | 0 | yes | yes | 12 (5, 7) | no | ORFmap |
| 15-DEC-1999 |   | AL122012 | L8342 | 23 | 32276 | 0 | yes | yes | 6 (4, 2) | no | ORFmap |
| 15-DEC-1999 |   | AL121864 | L4468 | 23 | 10406 | 0 | yes | yes | 2 (1, 1) | no | ORFmap |
| 15-DEC-1999 |   | AL121862 | L1063 | 23 | 40028 | 0 | yes | yes | 10 (5, 5) | no | ORFmap |
| 15-DEC-1999 |   | AL121851 | L2581 | 23 | 40519 | 0 | yes | yes | 14 (9, 5) | no | ORFmap |
| 15-DEC-1999 |   | AL117384 | L5883 | 23 | 31934 | 0 | yes | yes | 10 (5, 5) | no | ORFmap |
| 15-DEC-1999 |   | AL117324 | L2719 | 23 | 35468 | 0 | yes | yes | 14 (4, 10) | yes | ORFmap |
| 15-DEC-1999 |   | AL117263 | L7836 | 23 | 36235 | 0 | yes | yes | 9 (5, 4) | no | ORFmap |
| 15-DEC-1999 |   | AL117260 | L1648 | 23 | 34670 | 0 | yes | yes | 13 (7, 6) | yes | ORFmap |
| 10-DEC-1999 |   | AL133436 | L7276 | 23 | 18300 | 0 | yes | yes | 7 (2, 5) | no | ORFmap |
| 02-DEC-1999 |   | AF163772 | L7138 | 5 | 35060 | 4 | no | yes | 10 (2, 18) | yes | ORFmap |
| 15-OCT-1999 |   | AC008239 | L9003b | unknown | 3755 | 0 | yes | yes | 1 (1, 0) | no | ORFmap |
| 11-SEP-1999 |   | AC010078 | L1329 | 2 | 14300 | 100 | no | no | 0 (0, 0) | - |   |
| 11-SEP-1999 |   | AC010079 | L4116 | 2 | 37727 | 273 | no | no | 0 (0, 0) | - |   |
| 29-JUL-1999 |   | AC008241 | L952b | unknown | 19412 | 0 | yes | no | 0 (0, 0) | - |   |
| 24-MAR-1999 |   | AE001274 | Chr. 1 | 1 | 268984 | 0 | yes | yes | 79 (29, 50) | yes | ORFmap |
Of all the annotated ORFs, 1182 have some indication as to function (e.g. BLAST similarity), while 1389 do not.
There were 333 potential coding strand inflection points identified. Those identified in finished sequences are listed below:
Inflection type ORF map Accession Clone Chr.
Divergent ORFmap AL359683 P1046 13
Convergent ORFmap AL389894 chr_4_left_end 4
Divergent ORFmap AL354552 L3204 23
Convergent ORFmap AL354512 L1232 5
Convergent ORFmap AL354592 L8138 5
Divergent ORFmap AL163505 L3640 21
Convergent ORFmap AL449144 P214 13
Divergent ORFmap AL445678 L7845 35
Convergent ORFmap AL391394 L3856 21
Divergent ORFmap AL390075 L1375 21
Convergent ORFmap AF239995 L8530 5
Divergent ORFmap AL163552 L5075 14
Convergent ORFmap AC005928 L6290 3
Divergent ORFmap AL157416 L6066 19
Convergent ORFmap AL135898 L673 23
Divergent ORFmap AC005761 L952 3
Divergent ORFmap AL117324 L2719 23
Convergent ORFmap AL117324 L2719 23
Divergent ORFmap AL117260 L1648 23
Divergent ORFmap AF163772 L7138 5
Divergent ORFmap AE001274 Chr. 1 1
SUMMARY
Sequencing Centre Finished Unfinished Totals bp seqs ann. ORFs bp seqs ann.* ORFs bp seqs ann. ORFs
Sanger Centre
Beowulf 494453 3 3 131 14483355 11 4 1052 14977808 14 7 1183
Sanger Centre
EULEISH 3411652 88 85 911 515650 9 7 68 3927302 97 92 979
SBRI 3434708 83 30 340 3380756 48 2 19 6815464 131 32 359
Others 0 0 0 0 75679 2 2 21 75679 2 2 21
TOTALS 7340813 174 118 1382 18455440 70 15 1160 25796253 244 133 2542
Genome Survey Sequences
WashU         4212966 10462     4212966 10462    
Sanger         759728 1572     759728 1572    
SBRI         3118359 6441     3118359 6441    
Totals 7340813 174     26546493 18545     33887306 18719    
PLEASE NOTE:
Automated annotations of whole chromosome shotgun contigs are now stored in GeneDB and will not be submitted to EMBL until the relevant sequences are completed.
* Note that for some of the more recent "Sanger Centre Beowulf" unfinished sequences, preliminary annotation of assembled, but un-edited, whole chromosome shotgun reads frequently identifies putative coding regions that clearly form part of a single CDS; at this stage, they are multiply counted.
| Inflection type | ORF map | Accession | Clone | Chr. |
|---|---|---|---|---|
| Divergent | ORFmap | AL359683 | P1046 | 13 |
| Convergent | ORFmap | AL389894 | chr_4_left_end | 4 |
| Divergent | ORFmap | AL354552 | L3204 | 23 |
| Convergent | ORFmap | AL354512 | L1232 | 5 |
| Convergent | ORFmap | AL354592 | L8138 | 5 |
| Divergent | ORFmap | AL163505 | L3640 | 21 |
| Convergent | ORFmap | AL449144 | P214 | 13 |
| Divergent | ORFmap | AL445678 | L7845 | 35 |
| Convergent | ORFmap | AL391394 | L3856 | 21 |
| Divergent | ORFmap | AL390075 | L1375 | 21 |
| Convergent | ORFmap | AF239995 | L8530 | 5 |
| Divergent | ORFmap | AL163552 | L5075 | 14 |
| Convergent | ORFmap | AC005928 | L6290 | 3 |
| Divergent | ORFmap | AL157416 | L6066 | 19 |
| Convergent | ORFmap | AL135898 | L673 | 23 |
| Divergent | ORFmap | AC005761 | L952 | 3 |
| Divergent | ORFmap | AL117324 | L2719 | 23 |
| Convergent | ORFmap | AL117324 | L2719 | 23 |
| Divergent | ORFmap | AL117260 | L1648 | 23 |
| Divergent | ORFmap | AF163772 | L7138 | 5 |
| Divergent | ORFmap | AE001274 | Chr. 1 | 1 |
SUMMARY
| Sequencing Centre | Finished | Unfinished | Totals | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| bp | seqs | ann. | ORFs | bp | seqs | ann.* | ORFs | bp | seqs | ann. | ORFs | |
| Sanger Centre Beowulf | 494453 | 3 | 3 | 131 | 14483355 | 11 | 4 | 1052 | 14977808 | 14 | 7 | 1183 |
| Sanger Centre EULEISH | 3411652 | 88 | 85 | 911 | 515650 | 9 | 7 | 68 | 3927302 | 97 | 92 | 979 |
| SBRI | 3434708 | 83 | 30 | 340 | 3380756 | 48 | 2 | 19 | 6815464 | 131 | 32 | 359 |
| Others | 0 | 0 | 0 | 0 | 75679 | 2 | 2 | 21 | 75679 | 2 | 2 | 21 |
| TOTALS | 7340813 | 174 | 118 | 1382 | 18455440 | 70 | 15 | 1160 | 25796253 | 244 | 133 | 2542 |
| Genome Survey Sequences | ||||||||||||
| WashU |   |   |   |   | 4212966 | 10462 |   |   | 4212966 | 10462 |   |   |
| Sanger |   |   |   |   | 759728 | 1572 |   |   | 759728 | 1572 |   |   |
| SBRI |   |   |   |   | 3118359 | 6441 |   |   | 3118359 | 6441 |   |   |
| Totals | 7340813 | 174 |   |   | 26546493 | 18545 |   |   | 33887306 | 18719 |   |   |
PLEASE NOTE:



