Control Center
Welcome to the Control Center, the place where you can find all the tools available on MapSeq. The first block refers to analysis and exploration tasks. If you are a registered user, a second block dedicated to the management of your MapSeq account will appear. New tools will be incorporated into MapSeq based on the necessities of the community. Please check the short description presented with each tool to get a general idea of its capabilities.
Remember that you can activate a wizard to guide you step-by-step on the use of any tool or click on the help button to obtain contextual information. To go back to the Control Center just click on the first icon of the menu above.
Available Tasks
Choose one or more samples, and view their nucleotides at variable positions in any
region of the genome (specific genes, chromosome segments, etc.). Compare mutations
in different samples, and identify the present of phenotypically important variations.
Define groups of samples, and view their nucleotides, identifying the variable positions
where mutations are strongly associated with the grouping. Identify the genomic features
that characterize a population, or a phenotypic trait.
Choose a number of samples, and conduct Principal Component Analysis (PCA) on their
genotyping data- across the whole genome, or within specific genes or regions. Graphic
visualization allows you to explore genomic similarity and differences between samples.
View information about the samples available in MapSeq: geographical information,
study information, submitter information, etc.
View information about all the studies that are using the MapSeq/pf platform. Here you can check
the purpose of the studies, the associated samples, the collaborators and the principal investigator.